miRNA display CGI


Results 41 - 60 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25516 5' -60.9 NC_005337.1 + 81043 0.67 0.555822
Target:  5'- ---gGUGCCUGUccaugaucucGCGGaGCUCGCGGAu -3'
miRNA:   3'- uacgUACGGAUA----------CGCCgCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 6014 0.67 0.545892
Target:  5'- -cGCGUGCa---GCGGCGUCCGCc-- -3'
miRNA:   3'- uaCGUACGgauaCGCCGCGGGCGccu -5'
25516 5' -60.9 NC_005337.1 + 93437 0.67 0.544902
Target:  5'- -cGCGUGuCCcGUGCGGCucaugcggaagacGCCCGCcggcgGGAa -3'
miRNA:   3'- uaCGUAC-GGaUACGCCG-------------CGGGCG-----CCU- -5'
25516 5' -60.9 NC_005337.1 + 54252 0.67 0.536019
Target:  5'- -cGCGUccggGCCggGUGCGGCGCUuagcgccgCGCGGc -3'
miRNA:   3'- uaCGUA----CGGa-UACGCCGCGG--------GCGCCu -5'
25516 5' -60.9 NC_005337.1 + 5474 0.67 0.536019
Target:  5'- gGUGCGgcaccGCUcgGUGCGcaCGCCCGUGGAc -3'
miRNA:   3'- -UACGUa----CGGa-UACGCc-GCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 127867 0.67 0.536019
Target:  5'- uGUGCGUGCacaguCUGguggcgcGCGGCGCCgGCGa- -3'
miRNA:   3'- -UACGUACG-----GAUa------CGCCGCGGgCGCcu -5'
25516 5' -60.9 NC_005337.1 + 124228 0.67 0.536019
Target:  5'- cUGCGaGuUCUGggGCGGCGCCUGCGuGGa -3'
miRNA:   3'- uACGUaC-GGAUa-CGCCGCGGGCGC-CU- -5'
25516 5' -60.9 NC_005337.1 + 42617 0.67 0.536019
Target:  5'- -cGCccGCCaUGUGCGGCa-CCGCGGu -3'
miRNA:   3'- uaCGuaCGG-AUACGCCGcgGGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 115328 0.67 0.533069
Target:  5'- cGUGCucgcgacGCCcg-GCGGCgggcggaucugcguGCCCGCGGAc -3'
miRNA:   3'- -UACGua-----CGGauaCGCCG--------------CGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 21583 0.67 0.526209
Target:  5'- uUGCcgGUGCCUGUGCGGUaGgCCGCc-- -3'
miRNA:   3'- uACG--UACGGAUACGCCG-CgGGCGccu -5'
25516 5' -60.9 NC_005337.1 + 5829 0.67 0.526209
Target:  5'- cUGCAgagGUCguaccCGGcCGCCCGCGGGg -3'
miRNA:   3'- uACGUa--CGGauac-GCC-GCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 105366 0.67 0.526209
Target:  5'- -cGCGUGCUUGgucaccuCGGCGCCCGgcCGGu -3'
miRNA:   3'- uaCGUACGGAUac-----GCCGCGGGC--GCCu -5'
25516 5' -60.9 NC_005337.1 + 122046 0.67 0.526209
Target:  5'- gGUGCcgaGUGCCgcgucGUGGagacgcuGCCCGCGGAg -3'
miRNA:   3'- -UACG---UACGGaua--CGCCg------CGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 92513 0.67 0.525231
Target:  5'- gGUGCAagaGCCUGcGCGGcCGCCCcauggacGCGGu -3'
miRNA:   3'- -UACGUa--CGGAUaCGCC-GCGGG-------CGCCu -5'
25516 5' -60.9 NC_005337.1 + 83226 0.67 0.524255
Target:  5'- cUGCGgaagaucacgggGUUggggAUGCGGCGCCCGCGc- -3'
miRNA:   3'- uACGUa-----------CGGa---UACGCCGCGGGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 25104 0.68 0.516467
Target:  5'- -cGCccGCgCggcGCGGCGCgCGCGGAc -3'
miRNA:   3'- uaCGuaCG-GauaCGCCGCGgGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 29375 0.68 0.516467
Target:  5'- -gGCG-GCCgucGCGGCGCUgGUGGGg -3'
miRNA:   3'- uaCGUaCGGauaCGCCGCGGgCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 48615 0.68 0.506799
Target:  5'- -aGCGUGUCUGUGCagaacauGUGCUCgGCGGAc -3'
miRNA:   3'- uaCGUACGGAUACGc------CGCGGG-CGCCU- -5'
25516 5' -60.9 NC_005337.1 + 59712 0.68 0.497208
Target:  5'- -cGCGUGCCgc-GCGGCcagcaucacgcGCCgCGCGGc -3'
miRNA:   3'- uaCGUACGGauaCGCCG-----------CGG-GCGCCu -5'
25516 5' -60.9 NC_005337.1 + 29580 0.68 0.497208
Target:  5'- -aGCAgcuCCUcgGCGGUGUCCgacGCGGAc -3'
miRNA:   3'- uaCGUac-GGAuaCGCCGCGGG---CGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.