miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25516 5' -60.9 NC_005337.1 + 103985 0.66 0.615259
Target:  5'- gGUGCcgGCCguccugGCGcucaccuGCGCgCCGUGGAc -3'
miRNA:   3'- -UACGuaCGGaua---CGC-------CGCG-GGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 118146 0.66 0.614244
Target:  5'- uGUGCgGUGCCgccauggagguUGaCGGCGCCgCgGCGGAc -3'
miRNA:   3'- -UACG-UACGGau---------AC-GCCGCGG-G-CGCCU- -5'
25516 5' -60.9 NC_005337.1 + 34920 0.66 0.606129
Target:  5'- gAUGCA-GCCguuuugaagGUGGCGUCgGUGGAc -3'
miRNA:   3'- -UACGUaCGGaua------CGCCGCGGgCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 29032 0.66 0.606129
Target:  5'- -gGCggGCCUcguccAUGagccgGGCGCCCGCGa- -3'
miRNA:   3'- uaCGuaCGGA-----UACg----CCGCGGGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 68539 0.66 0.606129
Target:  5'- -aGCGUGCCgcgcuaGUGaCGGCGCCgggCGCGc- -3'
miRNA:   3'- uaCGUACGGa-----UAC-GCCGCGG---GCGCcu -5'
25516 5' -60.9 NC_005337.1 + 117895 0.66 0.606129
Target:  5'- uGUGCGUGUgCUggGCGGCGCUgGUGc- -3'
miRNA:   3'- -UACGUACG-GAuaCGCCGCGGgCGCcu -5'
25516 5' -60.9 NC_005337.1 + 106864 0.66 0.596002
Target:  5'- -cGCGUGCUU-UGCGGagaagauCCCGCGGu -3'
miRNA:   3'- uaCGUACGGAuACGCCgc-----GGGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 57064 0.66 0.585901
Target:  5'- -cGCAgccagGCCgcucUGCGaGCGCCCGCu-- -3'
miRNA:   3'- uaCGUa----CGGau--ACGC-CGCGGGCGccu -5'
25516 5' -60.9 NC_005337.1 + 73458 0.66 0.585901
Target:  5'- -cGCGcgGCg-GUGcCGcGUGCCCGCGGAg -3'
miRNA:   3'- uaCGUa-CGgaUAC-GC-CGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 3252 0.66 0.585901
Target:  5'- -cGCAcGCCUugucguUGCGGUGCgCgGCGGc -3'
miRNA:   3'- uaCGUaCGGAu-----ACGCCGCG-GgCGCCu -5'
25516 5' -60.9 NC_005337.1 + 133082 0.67 0.575833
Target:  5'- aAUGCGcGCCcGUGCcGCGCUCGCGc- -3'
miRNA:   3'- -UACGUaCGGaUACGcCGCGGGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 21882 0.67 0.575833
Target:  5'- -cGCAcgGCCUGcGCGGCGCUCcuccaGGAc -3'
miRNA:   3'- uaCGUa-CGGAUaCGCCGCGGGcg---CCU- -5'
25516 5' -60.9 NC_005337.1 + 63142 0.67 0.575833
Target:  5'- gGUGCAguUGCCgGUGCcGcCGCCCGaGGAc -3'
miRNA:   3'- -UACGU--ACGGaUACGcC-GCGGGCgCCU- -5'
25516 5' -60.9 NC_005337.1 + 43077 0.67 0.574829
Target:  5'- -gGCGcGCCcGUccgcaucGCGGCGCCCG-GGAu -3'
miRNA:   3'- uaCGUaCGGaUA-------CGCCGCGGGCgCCU- -5'
25516 5' -60.9 NC_005337.1 + 125408 0.67 0.563805
Target:  5'- cUGCGUGCCgucaugcacgGCGGCGUcaggguCCGCGa- -3'
miRNA:   3'- uACGUACGGaua-------CGCCGCG------GGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 79649 0.67 0.558812
Target:  5'- cGUGCAcggucacUGCCUccuugAUGacgucguucggcgaGGUGCCCGUGGAg -3'
miRNA:   3'- -UACGU-------ACGGA-----UACg-------------CCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 81043 0.67 0.555822
Target:  5'- ---gGUGCCUGUccaugaucucGCGGaGCUCGCGGAu -3'
miRNA:   3'- uacgUACGGAUA----------CGCCgCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 23185 0.67 0.555822
Target:  5'- cUGCuggacgGCCUG-GCGcaccucaCGCCCGCGGAc -3'
miRNA:   3'- uACGua----CGGAUaCGCc------GCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 23911 0.67 0.555822
Target:  5'- -cGC-UGCCgc-GCGcccgcGCGCCCGCGGc -3'
miRNA:   3'- uaCGuACGGauaCGC-----CGCGGGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 77767 0.67 0.555822
Target:  5'- -cGCGcGCCU---CGGgGUCCGCGGAg -3'
miRNA:   3'- uaCGUaCGGAuacGCCgCGGGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.