miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25516 5' -60.9 NC_005337.1 + 99391 0.71 0.357216
Target:  5'- -gGCAccaccUGCCgGUGCuGCGCaCCGCGGGc -3'
miRNA:   3'- uaCGU-----ACGGaUACGcCGCG-GGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 38175 0.7 0.373152
Target:  5'- -cGCAUGuCCUccGCcGCGCCCGCGu- -3'
miRNA:   3'- uaCGUAC-GGAuaCGcCGCGGGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 29163 0.7 0.373152
Target:  5'- -aGCA-GCCUAaaacGCGGCGCCgCGCGa- -3'
miRNA:   3'- uaCGUaCGGAUa---CGCCGCGG-GCGCcu -5'
25516 5' -60.9 NC_005337.1 + 123600 0.7 0.373152
Target:  5'- cUGCG-GCCgcacGUGCcGCGCUCGCGGGu -3'
miRNA:   3'- uACGUaCGGa---UACGcCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 10575 0.7 0.384591
Target:  5'- -gGCGUGCCcagccgccgcaCGGCGUCCGUGGAc -3'
miRNA:   3'- uaCGUACGGauac-------GCCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 123124 0.7 0.389564
Target:  5'- -aGCAcGUC-GUGCGGCGCCCgucGCGGu -3'
miRNA:   3'- uaCGUaCGGaUACGCCGCGGG---CGCCu -5'
25516 5' -60.9 NC_005337.1 + 2837 0.7 0.389564
Target:  5'- -aGCGcgGCCUccGCGGagacggaGUCCGCGGAg -3'
miRNA:   3'- uaCGUa-CGGAuaCGCCg------CGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 59990 0.7 0.405586
Target:  5'- uGUGCccccgugGUGCCaUAUGCGGCuauuuuucgGCgCGCGGAg -3'
miRNA:   3'- -UACG-------UACGG-AUACGCCG---------CGgGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 66072 0.7 0.40644
Target:  5'- -gGCggGCCcgcaGCGGCGCCCcCGGGg -3'
miRNA:   3'- uaCGuaCGGaua-CGCCGCGGGcGCCU- -5'
25516 5' -60.9 NC_005337.1 + 47674 0.69 0.41505
Target:  5'- -gGCAUGCUg--GCgGGCGUCCGCGu- -3'
miRNA:   3'- uaCGUACGGauaCG-CCGCGGGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 132171 0.69 0.432598
Target:  5'- -cGCGUGCCUGaccgggcucGCGGCGCgCGCcGAc -3'
miRNA:   3'- uaCGUACGGAUa--------CGCCGCGgGCGcCU- -5'
25516 5' -60.9 NC_005337.1 + 85354 0.69 0.441533
Target:  5'- -cGCAguUGCCggacGCGGUGCCCGUGu- -3'
miRNA:   3'- uaCGU--ACGGaua-CGCCGCGGGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 117808 0.69 0.441533
Target:  5'- -gGCAUGaacggcGUGGCGCCCGgGGAc -3'
miRNA:   3'- uaCGUACggaua-CGCCGCGGGCgCCU- -5'
25516 5' -60.9 NC_005337.1 + 116328 0.68 0.468948
Target:  5'- gGUGCGUGCUgcUGCgGGCGCagCGcCGGGc -3'
miRNA:   3'- -UACGUACGGauACG-CCGCGg-GC-GCCU- -5'
25516 5' -60.9 NC_005337.1 + 59655 0.68 0.478279
Target:  5'- gGUGCAccaCCU-UGuCGGCGCCCGCGa- -3'
miRNA:   3'- -UACGUac-GGAuAC-GCCGCGGGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 99427 0.68 0.478279
Target:  5'- gGUGCGUGCUgagccGCGGCGUgggccaccUCGUGGAc -3'
miRNA:   3'- -UACGUACGGaua--CGCCGCG--------GGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 1613 0.68 0.486754
Target:  5'- -gGCGUGaucccguuCCUcgaucggaggucgAUGCGcGCGCCCGCGGc -3'
miRNA:   3'- uaCGUAC--------GGA-------------UACGC-CGCGGGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 97102 0.68 0.4877
Target:  5'- cAUGCugGUGCCgcaGUGGCGCUCgGCGGu -3'
miRNA:   3'- -UACG--UACGGauaCGCCGCGGG-CGCCu -5'
25516 5' -60.9 NC_005337.1 + 38459 0.68 0.4877
Target:  5'- -gGCGUacGCCUucAUGCGGUGCgCGcCGGGc -3'
miRNA:   3'- uaCGUA--CGGA--UACGCCGCGgGC-GCCU- -5'
25516 5' -60.9 NC_005337.1 + 49346 0.68 0.497208
Target:  5'- -gGCAacucgaUGCUUcUGCGGCGCgUGCGGc -3'
miRNA:   3'- uaCGU------ACGGAuACGCCGCGgGCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.