miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25516 5' -60.9 NC_005337.1 + 125288 1.06 0.001101
Target:  5'- gAUGCAUGCCUAUGCGGCGCCCGCGGAu -3'
miRNA:   3'- -UACGUACGGAUACGCCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 121104 0.76 0.162731
Target:  5'- -cGCGagGCggAcGCGGCGCCCGCGGAg -3'
miRNA:   3'- uaCGUa-CGgaUaCGCCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 88254 0.75 0.189114
Target:  5'- cGUGCGUGCCggcgcgccgGCGG-GCgCCGCGGAg -3'
miRNA:   3'- -UACGUACGGaua------CGCCgCG-GGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 17570 0.74 0.213905
Target:  5'- aGUGCuuGUGCCgcgccauUGCGGCcggcucGCCCGCGGGc -3'
miRNA:   3'- -UACG--UACGGau-----ACGCCG------CGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 63526 0.74 0.213905
Target:  5'- cGUGCAgGCCUcgggcGUGCGGCGCUCGUuugccGGAc -3'
miRNA:   3'- -UACGUaCGGA-----UACGCCGCGGGCG-----CCU- -5'
25516 5' -60.9 NC_005337.1 + 95604 0.74 0.224579
Target:  5'- gGUGCAgcagcgcGCCaugGCGGCGUCCGUGGGc -3'
miRNA:   3'- -UACGUa------CGGauaCGCCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 46002 0.72 0.284858
Target:  5'- -gGcCAUGuCCUccGCGGCGCCCGcCGGc -3'
miRNA:   3'- uaC-GUAC-GGAuaCGCCGCGGGC-GCCu -5'
25516 5' -60.9 NC_005337.1 + 115140 0.72 0.297662
Target:  5'- -aGCAUcccggGCUUcgaccaccuggagAUGcCGGCGCCCGCGGAc -3'
miRNA:   3'- uaCGUA-----CGGA-------------UAC-GCCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 66093 0.72 0.298348
Target:  5'- -gGCGgagGCgCUGUGCGGCGUCUGCGc- -3'
miRNA:   3'- uaCGUa--CG-GAUACGCCGCGGGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 76476 0.72 0.298348
Target:  5'- -cGCAg----AUGCGGCuGCCCGCGGAg -3'
miRNA:   3'- uaCGUacggaUACGCCG-CGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 52461 0.72 0.305277
Target:  5'- cAUGUccGCgCUGagccGCGGCGCCCGCGaGAg -3'
miRNA:   3'- -UACGuaCG-GAUa---CGCCGCGGGCGC-CU- -5'
25516 5' -60.9 NC_005337.1 + 103232 0.71 0.319504
Target:  5'- cUGCAaccUGCCgcugGUGC-GCGCCCGCGcGGu -3'
miRNA:   3'- uACGU---ACGGa---UACGcCGCGGGCGC-CU- -5'
25516 5' -60.9 NC_005337.1 + 11639 0.71 0.319504
Target:  5'- -cGCGU-CUUGcgGCGGUGCUCGCGGAa -3'
miRNA:   3'- uaCGUAcGGAUa-CGCCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 738 0.71 0.319504
Target:  5'- -cGCggGCgaGagcGCGGCGCCCGCGGc -3'
miRNA:   3'- uaCGuaCGgaUa--CGCCGCGGGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 738 0.71 0.319504
Target:  5'- -cGCggGCgaGagcGCGGCGCCCGCGGc -3'
miRNA:   3'- uaCGuaCGgaUa--CGCCGCGGGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 122722 0.71 0.326801
Target:  5'- -cGCGUGCUgucGCacGUGCCCGCGGAc -3'
miRNA:   3'- uaCGUACGGauaCGc-CGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 99480 0.71 0.333474
Target:  5'- -gGCGUcuucgugGCC-GUGCGGCGCUaCGCGGAc -3'
miRNA:   3'- uaCGUA-------CGGaUACGCCGCGG-GCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 34178 0.71 0.334222
Target:  5'- -cGCA-GCUccacGCGGCGCgCCGCGGAc -3'
miRNA:   3'- uaCGUaCGGaua-CGCCGCG-GGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 29108 0.71 0.341764
Target:  5'- -cGCAgaggcUGCCggguaaguagGUGCGGCGaugCCGCGGAu -3'
miRNA:   3'- uaCGU-----ACGGa---------UACGCCGCg--GGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 99573 0.71 0.357216
Target:  5'- cUGCGgcUGCUcGUGCGGCGCUUcggGCGGGa -3'
miRNA:   3'- uACGU--ACGGaUACGCCGCGGG---CGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.