Results 1 - 20 of 100 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 64234 | 0.66 | 0.636594 |
Target: 5'- -gGCAgcGCCUcuuUGCGGCGC-UGCGGc -3' miRNA: 3'- uaCGUa-CGGAu--ACGCCGCGgGCGCCu -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 41399 | 0.66 | 0.646753 |
Target: 5'- -cGCggGCagAUGacgucCGGCGUCCGCGGGa -3' miRNA: 3'- uaCGuaCGgaUAC-----GCCGCGGGCGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 43834 | 0.66 | 0.636594 |
Target: 5'- cUGCAgcggGCCg--GCGGCG-CgGUGGAg -3' miRNA: 3'- uACGUa---CGGauaCGCCGCgGgCGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 99151 | 0.66 | 0.626432 |
Target: 5'- aGUGCGccGCaCUggGCGuccGCGCCgCGCGGAc -3' miRNA: 3'- -UACGUa-CG-GAuaCGC---CGCGG-GCGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 99657 | 0.66 | 0.635578 |
Target: 5'- -gGCAUcGCCgc-GCGGCugggcgcGCCCGUGGc -3' miRNA: 3'- uaCGUA-CGGauaCGCCG-------CGGGCGCCu -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 35578 | 0.66 | 0.646753 |
Target: 5'- -cGgAUGCCUAgcgagGCGGaucCCCGcCGGAg -3' miRNA: 3'- uaCgUACGGAUa----CGCCgc-GGGC-GCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 37680 | 0.66 | 0.636594 |
Target: 5'- uUGCuguucacGCCcGUGUGGaCGCCCGCGc- -3' miRNA: 3'- uACGua-----CGGaUACGCC-GCGGGCGCcu -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 29032 | 0.66 | 0.606129 |
Target: 5'- -gGCggGCCUcguccAUGagccgGGCGCCCGCGa- -3' miRNA: 3'- uaCGuaCGGA-----UACg----CCGCGGGCGCcu -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 34920 | 0.66 | 0.606129 |
Target: 5'- gAUGCA-GCCguuuugaagGUGGCGUCgGUGGAc -3' miRNA: 3'- -UACGUaCGGaua------CGCCGCGGgCGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 56894 | 0.66 | 0.646753 |
Target: 5'- -cGCcgGCUgguguUGCGGCa-CCGCGGGa -3' miRNA: 3'- uaCGuaCGGau---ACGCCGcgGGCGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 74938 | 0.66 | 0.645737 |
Target: 5'- -cGCGcgGCCgcgcggAUGCGGUGCuggggcuCCGCGGc -3' miRNA: 3'- uaCGUa-CGGa-----UACGCCGCG-------GGCGCCu -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 40532 | 0.66 | 0.616275 |
Target: 5'- cAUGCA-GCCgccGCGGCGCgCgGUGGu -3' miRNA: 3'- -UACGUaCGGauaCGCCGCG-GgCGCCu -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 73458 | 0.66 | 0.585901 |
Target: 5'- -cGCGcgGCg-GUGcCGcGUGCCCGCGGAg -3' miRNA: 3'- uaCGUa-CGgaUAC-GC-CGCGGGCGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 68539 | 0.66 | 0.606129 |
Target: 5'- -aGCGUGCCgcgcuaGUGaCGGCGCCgggCGCGc- -3' miRNA: 3'- uaCGUACGGa-----UAC-GCCGCGG---GCGCcu -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 118146 | 0.66 | 0.614244 |
Target: 5'- uGUGCgGUGCCgccauggagguUGaCGGCGCCgCgGCGGAc -3' miRNA: 3'- -UACG-UACGGau---------AC-GCCGCGG-G-CGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 122384 | 0.66 | 0.616275 |
Target: 5'- uGUGCGUGCgcgaggucgugCUGcGCGGCGgCgCGCGGc -3' miRNA: 3'- -UACGUACG-----------GAUaCGCCGCgG-GCGCCu -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 36548 | 0.66 | 0.646753 |
Target: 5'- -gGCG-GCUgg-GCGGCGCCgGCGa- -3' miRNA: 3'- uaCGUaCGGauaCGCCGCGGgCGCcu -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 126030 | 0.66 | 0.636594 |
Target: 5'- -cGCGUGCgUGUGUcucauGcGCGCCggUGCGGAc -3' miRNA: 3'- uaCGUACGgAUACG-----C-CGCGG--GCGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 3252 | 0.66 | 0.585901 |
Target: 5'- -cGCAcGCCUugucguUGCGGUGCgCgGCGGc -3' miRNA: 3'- uaCGUaCGGAu-----ACGCCGCG-GgCGCCu -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 100756 | 0.66 | 0.636594 |
Target: 5'- -cGCGUGCagc--CGGCGCaCgGCGGAg -3' miRNA: 3'- uaCGUACGgauacGCCGCG-GgCGCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home