Results 21 - 40 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 99151 | 0.66 | 0.626432 |
Target: 5'- aGUGCGccGCaCUggGCGuccGCGCCgCGCGGAc -3' miRNA: 3'- -UACGUa-CG-GAuaCGC---CGCGG-GCGCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 68539 | 0.66 | 0.606129 |
Target: 5'- -aGCGUGCCgcgcuaGUGaCGGCGCCgggCGCGc- -3' miRNA: 3'- uaCGUACGGa-----UAC-GCCGCGG---GCGCcu -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 29032 | 0.66 | 0.606129 |
Target: 5'- -gGCggGCCUcguccAUGagccgGGCGCCCGCGa- -3' miRNA: 3'- uaCGuaCGGA-----UACg----CCGCGGGCGCcu -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 73458 | 0.66 | 0.585901 |
Target: 5'- -cGCGcgGCg-GUGcCGcGUGCCCGCGGAg -3' miRNA: 3'- uaCGUa-CGgaUAC-GC-CGCGGGCGCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 99657 | 0.66 | 0.635578 |
Target: 5'- -gGCAUcGCCgc-GCGGCugggcgcGCCCGUGGc -3' miRNA: 3'- uaCGUA-CGGauaCGCCG-------CGGGCGCCu -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 43834 | 0.66 | 0.636594 |
Target: 5'- cUGCAgcggGCCg--GCGGCG-CgGUGGAg -3' miRNA: 3'- uACGUa---CGGauaCGCCGCgGgCGCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 64234 | 0.66 | 0.636594 |
Target: 5'- -gGCAgcGCCUcuuUGCGGCGC-UGCGGc -3' miRNA: 3'- uaCGUa-CGGAu--ACGCCGCGgGCGCCu -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 37680 | 0.66 | 0.636594 |
Target: 5'- uUGCuguucacGCCcGUGUGGaCGCCCGCGc- -3' miRNA: 3'- uACGua-----CGGaUACGCC-GCGGGCGCcu -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 100756 | 0.66 | 0.636594 |
Target: 5'- -cGCGUGCagc--CGGCGCaCgGCGGAg -3' miRNA: 3'- uaCGUACGgauacGCCGCG-GgCGCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 40532 | 0.66 | 0.616275 |
Target: 5'- cAUGCA-GCCgccGCGGCGCgCgGUGGu -3' miRNA: 3'- -UACGUaCGGauaCGCCGCG-GgCGCCu -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 92513 | 0.67 | 0.525231 |
Target: 5'- gGUGCAagaGCCUGcGCGGcCGCCCcauggacGCGGu -3' miRNA: 3'- -UACGUa--CGGAUaCGCC-GCGGG-------CGCCu -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 63142 | 0.67 | 0.575833 |
Target: 5'- gGUGCAguUGCCgGUGCcGcCGCCCGaGGAc -3' miRNA: 3'- -UACGU--ACGGaUACGcC-GCGGGCgCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 115328 | 0.67 | 0.533069 |
Target: 5'- cGUGCucgcgacGCCcg-GCGGCgggcggaucugcguGCCCGCGGAc -3' miRNA: 3'- -UACGua-----CGGauaCGCCG--------------CGGGCGCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 105366 | 0.67 | 0.526209 |
Target: 5'- -cGCGUGCUUGgucaccuCGGCGCCCGgcCGGu -3' miRNA: 3'- uaCGUACGGAUac-----GCCGCGGGC--GCCu -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 5829 | 0.67 | 0.526209 |
Target: 5'- cUGCAgagGUCguaccCGGcCGCCCGCGGGg -3' miRNA: 3'- uACGUa--CGGauac-GCC-GCGGGCGCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 93437 | 0.67 | 0.544902 |
Target: 5'- -cGCGUGuCCcGUGCGGCucaugcggaagacGCCCGCcggcgGGAa -3' miRNA: 3'- uaCGUAC-GGaUACGCCG-------------CGGGCG-----CCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 127867 | 0.67 | 0.536019 |
Target: 5'- uGUGCGUGCacaguCUGguggcgcGCGGCGCCgGCGa- -3' miRNA: 3'- -UACGUACG-----GAUa------CGCCGCGGgCGCcu -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 124228 | 0.67 | 0.536019 |
Target: 5'- cUGCGaGuUCUGggGCGGCGCCUGCGuGGa -3' miRNA: 3'- uACGUaC-GGAUa-CGCCGCGGGCGC-CU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 122046 | 0.67 | 0.526209 |
Target: 5'- gGUGCcgaGUGCCgcgucGUGGagacgcuGCCCGCGGAg -3' miRNA: 3'- -UACG---UACGGaua--CGCCg------CGGGCGCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 83226 | 0.67 | 0.524255 |
Target: 5'- cUGCGgaagaucacgggGUUggggAUGCGGCGCCCGCGc- -3' miRNA: 3'- uACGUa-----------CGGa---UACGCCGCGGGCGCcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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