miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25516 5' -60.9 NC_005337.1 + 29108 0.71 0.341764
Target:  5'- -cGCAgaggcUGCCggguaaguagGUGCGGCGaugCCGCGGAu -3'
miRNA:   3'- uaCGU-----ACGGa---------UACGCCGCg--GGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 29163 0.7 0.373152
Target:  5'- -aGCA-GCCUAaaacGCGGCGCCgCGCGa- -3'
miRNA:   3'- uaCGUaCGGAUa---CGCCGCGG-GCGCcu -5'
25516 5' -60.9 NC_005337.1 + 29375 0.68 0.516467
Target:  5'- -gGCG-GCCgucGCGGCGCUgGUGGGg -3'
miRNA:   3'- uaCGUaCGGauaCGCCGCGGgCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 29580 0.68 0.497208
Target:  5'- -aGCAgcuCCUcgGCGGUGUCCgacGCGGAc -3'
miRNA:   3'- uaCGUac-GGAuaCGCCGCGGG---CGCCU- -5'
25516 5' -60.9 NC_005337.1 + 34178 0.71 0.334222
Target:  5'- -cGCA-GCUccacGCGGCGCgCCGCGGAc -3'
miRNA:   3'- uaCGUaCGGaua-CGCCGCG-GGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 34920 0.66 0.606129
Target:  5'- gAUGCA-GCCguuuugaagGUGGCGUCgGUGGAc -3'
miRNA:   3'- -UACGUaCGGaua------CGCCGCGGgCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 35578 0.66 0.646753
Target:  5'- -cGgAUGCCUAgcgagGCGGaucCCCGcCGGAg -3'
miRNA:   3'- uaCgUACGGAUa----CGCCgc-GGGC-GCCU- -5'
25516 5' -60.9 NC_005337.1 + 36548 0.66 0.646753
Target:  5'- -gGCG-GCUgg-GCGGCGCCgGCGa- -3'
miRNA:   3'- uaCGUaCGGauaCGCCGCGGgCGCcu -5'
25516 5' -60.9 NC_005337.1 + 37680 0.66 0.636594
Target:  5'- uUGCuguucacGCCcGUGUGGaCGCCCGCGc- -3'
miRNA:   3'- uACGua-----CGGaUACGCC-GCGGGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 38175 0.7 0.373152
Target:  5'- -cGCAUGuCCUccGCcGCGCCCGCGu- -3'
miRNA:   3'- uaCGUAC-GGAuaCGcCGCGGGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 38459 0.68 0.4877
Target:  5'- -gGCGUacGCCUucAUGCGGUGCgCGcCGGGc -3'
miRNA:   3'- uaCGUA--CGGA--UACGCCGCGgGC-GCCU- -5'
25516 5' -60.9 NC_005337.1 + 40532 0.66 0.616275
Target:  5'- cAUGCA-GCCgccGCGGCGCgCgGUGGu -3'
miRNA:   3'- -UACGUaCGGauaCGCCGCG-GgCGCCu -5'
25516 5' -60.9 NC_005337.1 + 41399 0.66 0.646753
Target:  5'- -cGCggGCagAUGacgucCGGCGUCCGCGGGa -3'
miRNA:   3'- uaCGuaCGgaUAC-----GCCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 42617 0.67 0.536019
Target:  5'- -cGCccGCCaUGUGCGGCa-CCGCGGu -3'
miRNA:   3'- uaCGuaCGG-AUACGCCGcgGGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 43077 0.67 0.574829
Target:  5'- -gGCGcGCCcGUccgcaucGCGGCGCCCG-GGAu -3'
miRNA:   3'- uaCGUaCGGaUA-------CGCCGCGGGCgCCU- -5'
25516 5' -60.9 NC_005337.1 + 43834 0.66 0.636594
Target:  5'- cUGCAgcggGCCg--GCGGCG-CgGUGGAg -3'
miRNA:   3'- uACGUa---CGGauaCGCCGCgGgCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 46002 0.72 0.284858
Target:  5'- -gGcCAUGuCCUccGCGGCGCCCGcCGGc -3'
miRNA:   3'- uaC-GUAC-GGAuaCGCCGCGGGC-GCCu -5'
25516 5' -60.9 NC_005337.1 + 47674 0.69 0.41505
Target:  5'- -gGCAUGCUg--GCgGGCGUCCGCGu- -3'
miRNA:   3'- uaCGUACGGauaCG-CCGCGGGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 48615 0.68 0.506799
Target:  5'- -aGCGUGUCUGUGCagaacauGUGCUCgGCGGAc -3'
miRNA:   3'- uaCGUACGGAUACGc------CGCGGG-CGCCU- -5'
25516 5' -60.9 NC_005337.1 + 49346 0.68 0.497208
Target:  5'- -gGCAacucgaUGCUUcUGCGGCGCgUGCGGc -3'
miRNA:   3'- uaCGU------ACGGAuACGCCGCGgGCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.