miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25516 5' -60.9 NC_005337.1 + 738 0.71 0.319504
Target:  5'- -cGCggGCgaGagcGCGGCGCCCGCGGc -3'
miRNA:   3'- uaCGuaCGgaUa--CGCCGCGGGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 738 0.71 0.319504
Target:  5'- -cGCggGCgaGagcGCGGCGCCCGCGGc -3'
miRNA:   3'- uaCGuaCGgaUa--CGCCGCGGGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 1613 0.68 0.486754
Target:  5'- -gGCGUGaucccguuCCUcgaucggaggucgAUGCGcGCGCCCGCGGc -3'
miRNA:   3'- uaCGUAC--------GGA-------------UACGC-CGCGGGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 2837 0.7 0.389564
Target:  5'- -aGCGcgGCCUccGCGGagacggaGUCCGCGGAg -3'
miRNA:   3'- uaCGUa-CGGAuaCGCCg------CGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 3252 0.66 0.585901
Target:  5'- -cGCAcGCCUugucguUGCGGUGCgCgGCGGc -3'
miRNA:   3'- uaCGUaCGGAu-----ACGCCGCG-GgCGCCu -5'
25516 5' -60.9 NC_005337.1 + 3490 0.66 0.636594
Target:  5'- -aGCA-GCCgcaccgGCGGCGCCCaggucuGCGcGAa -3'
miRNA:   3'- uaCGUaCGGaua---CGCCGCGGG------CGC-CU- -5'
25516 5' -60.9 NC_005337.1 + 5474 0.67 0.536019
Target:  5'- gGUGCGgcaccGCUcgGUGCGcaCGCCCGUGGAc -3'
miRNA:   3'- -UACGUa----CGGa-UACGCc-GCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 5584 0.66 0.626432
Target:  5'- -cGCGUcGCCagcGCGcGUGCCCgGCGGGg -3'
miRNA:   3'- uaCGUA-CGGauaCGC-CGCGGG-CGCCU- -5'
25516 5' -60.9 NC_005337.1 + 5829 0.67 0.526209
Target:  5'- cUGCAgagGUCguaccCGGcCGCCCGCGGGg -3'
miRNA:   3'- uACGUa--CGGauac-GCC-GCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 6014 0.67 0.545892
Target:  5'- -cGCGUGCa---GCGGCGUCCGCc-- -3'
miRNA:   3'- uaCGUACGgauaCGCCGCGGGCGccu -5'
25516 5' -60.9 NC_005337.1 + 10575 0.7 0.384591
Target:  5'- -gGCGUGCCcagccgccgcaCGGCGUCCGUGGAc -3'
miRNA:   3'- uaCGUACGGauac-------GCCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 10812 0.66 0.636594
Target:  5'- -cGCAugaagaagaUGCC-GUGCuGGCGCUgcggCGCGGAg -3'
miRNA:   3'- uaCGU---------ACGGaUACG-CCGCGG----GCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 11639 0.71 0.319504
Target:  5'- -cGCGU-CUUGcgGCGGUGCUCGCGGAa -3'
miRNA:   3'- uaCGUAcGGAUa-CGCCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 17570 0.74 0.213905
Target:  5'- aGUGCuuGUGCCgcgccauUGCGGCcggcucGCCCGCGGGc -3'
miRNA:   3'- -UACG--UACGGau-----ACGCCG------CGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 21583 0.67 0.526209
Target:  5'- uUGCcgGUGCCUGUGCGGUaGgCCGCc-- -3'
miRNA:   3'- uACG--UACGGAUACGCCG-CgGGCGccu -5'
25516 5' -60.9 NC_005337.1 + 21882 0.67 0.575833
Target:  5'- -cGCAcgGCCUGcGCGGCGCUCcuccaGGAc -3'
miRNA:   3'- uaCGUa-CGGAUaCGCCGCGGGcg---CCU- -5'
25516 5' -60.9 NC_005337.1 + 23185 0.67 0.555822
Target:  5'- cUGCuggacgGCCUG-GCGcaccucaCGCCCGCGGAc -3'
miRNA:   3'- uACGua----CGGAUaCGCc------GCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 23911 0.67 0.555822
Target:  5'- -cGC-UGCCgc-GCGcccgcGCGCCCGCGGc -3'
miRNA:   3'- uaCGuACGGauaCGC-----CGCGGGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 25104 0.68 0.516467
Target:  5'- -cGCccGCgCggcGCGGCGCgCGCGGAc -3'
miRNA:   3'- uaCGuaCG-GauaCGCCGCGgGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 29032 0.66 0.606129
Target:  5'- -gGCggGCCUcguccAUGagccgGGCGCCCGCGa- -3'
miRNA:   3'- uaCGuaCGGA-----UACg----CCGCGGGCGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.