miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25516 5' -60.9 NC_005337.1 + 133082 0.67 0.575833
Target:  5'- aAUGCGcGCCcGUGCcGCGCUCGCGc- -3'
miRNA:   3'- -UACGUaCGGaUACGcCGCGGGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 132171 0.69 0.432598
Target:  5'- -cGCGUGCCUGaccgggcucGCGGCGCgCGCcGAc -3'
miRNA:   3'- uaCGUACGGAUa--------CGCCGCGgGCGcCU- -5'
25516 5' -60.9 NC_005337.1 + 131472 0.66 0.645737
Target:  5'- cUGCAgcagcGCCUAgugcacaUGCGGCaccgguccgcGCUCGUGGAc -3'
miRNA:   3'- uACGUa----CGGAU-------ACGCCG----------CGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 127867 0.67 0.536019
Target:  5'- uGUGCGUGCacaguCUGguggcgcGCGGCGCCgGCGa- -3'
miRNA:   3'- -UACGUACG-----GAUa------CGCCGCGGgCGCcu -5'
25516 5' -60.9 NC_005337.1 + 126030 0.66 0.636594
Target:  5'- -cGCGUGCgUGUGUcucauGcGCGCCggUGCGGAc -3'
miRNA:   3'- uaCGUACGgAUACG-----C-CGCGG--GCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 125408 0.67 0.563805
Target:  5'- cUGCGUGCCgucaugcacgGCGGCGUcaggguCCGCGa- -3'
miRNA:   3'- uACGUACGGaua-------CGCCGCG------GGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 125288 1.06 0.001101
Target:  5'- gAUGCAUGCCUAUGCGGCGCCCGCGGAu -3'
miRNA:   3'- -UACGUACGGAUACGCCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 124228 0.67 0.536019
Target:  5'- cUGCGaGuUCUGggGCGGCGCCUGCGuGGa -3'
miRNA:   3'- uACGUaC-GGAUa-CGCCGCGGGCGC-CU- -5'
25516 5' -60.9 NC_005337.1 + 123600 0.7 0.373152
Target:  5'- cUGCG-GCCgcacGUGCcGCGCUCGCGGGu -3'
miRNA:   3'- uACGUaCGGa---UACGcCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 123124 0.7 0.389564
Target:  5'- -aGCAcGUC-GUGCGGCGCCCgucGCGGu -3'
miRNA:   3'- uaCGUaCGGaUACGCCGCGGG---CGCCu -5'
25516 5' -60.9 NC_005337.1 + 122722 0.71 0.326801
Target:  5'- -cGCGUGCUgucGCacGUGCCCGCGGAc -3'
miRNA:   3'- uaCGUACGGauaCGc-CGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 122384 0.66 0.616275
Target:  5'- uGUGCGUGCgcgaggucgugCUGcGCGGCGgCgCGCGGc -3'
miRNA:   3'- -UACGUACG-----------GAUaCGCCGCgG-GCGCCu -5'
25516 5' -60.9 NC_005337.1 + 122046 0.67 0.526209
Target:  5'- gGUGCcgaGUGCCgcgucGUGGagacgcuGCCCGCGGAg -3'
miRNA:   3'- -UACG---UACGGaua--CGCCg------CGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 121104 0.76 0.162731
Target:  5'- -cGCGagGCggAcGCGGCGCCCGCGGAg -3'
miRNA:   3'- uaCGUa-CGgaUaCGCCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 118146 0.66 0.614244
Target:  5'- uGUGCgGUGCCgccauggagguUGaCGGCGCCgCgGCGGAc -3'
miRNA:   3'- -UACG-UACGGau---------AC-GCCGCGG-G-CGCCU- -5'
25516 5' -60.9 NC_005337.1 + 117895 0.66 0.606129
Target:  5'- uGUGCGUGUgCUggGCGGCGCUgGUGc- -3'
miRNA:   3'- -UACGUACG-GAuaCGCCGCGGgCGCcu -5'
25516 5' -60.9 NC_005337.1 + 117808 0.69 0.441533
Target:  5'- -gGCAUGaacggcGUGGCGCCCGgGGAc -3'
miRNA:   3'- uaCGUACggaua-CGCCGCGGGCgCCU- -5'
25516 5' -60.9 NC_005337.1 + 116328 0.68 0.468948
Target:  5'- gGUGCGUGCUgcUGCgGGCGCagCGcCGGGc -3'
miRNA:   3'- -UACGUACGGauACG-CCGCGg-GC-GCCU- -5'
25516 5' -60.9 NC_005337.1 + 115328 0.67 0.533069
Target:  5'- cGUGCucgcgacGCCcg-GCGGCgggcggaucugcguGCCCGCGGAc -3'
miRNA:   3'- -UACGua-----CGGauaCGCCG--------------CGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 115140 0.72 0.297662
Target:  5'- -aGCAUcccggGCUUcgaccaccuggagAUGcCGGCGCCCGCGGAc -3'
miRNA:   3'- uaCGUA-----CGGA-------------UAC-GCCGCGGGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.