miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25517 3' -60.6 NC_005337.1 + 41603 0.66 0.658295
Target:  5'- aGGGCgugGUCGuGGCGaAGGaGGCCGUg- -3'
miRNA:   3'- -CCCG---UAGCuCCGCgUCUaCCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 43334 0.67 0.578161
Target:  5'- gGGGCucgcCGAcGCGC---UGGCCGCCGg -3'
miRNA:   3'- -CCCGua--GCUcCGCGucuACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 44479 0.67 0.628188
Target:  5'- aGGCcaguUCGAGGCGC----GGCCGCg- -3'
miRNA:   3'- cCCGu---AGCUCCGCGucuaCCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 45342 0.67 0.588118
Target:  5'- aGGCGgaucaUGGGGCGCgAGGUGGUgcucaGCCAg -3'
miRNA:   3'- cCCGUa----GCUCCGCG-UCUACCGg----CGGU- -5'
25517 3' -60.6 NC_005337.1 + 45531 0.68 0.529049
Target:  5'- cGGCGUCGGgagccGGUGCuGGAgucgGcGCCGCCGu -3'
miRNA:   3'- cCCGUAGCU-----CCGCG-UCUa---C-CGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 47319 0.66 0.658295
Target:  5'- uGGUcauguUCGAGGCGCGcGUGGUcauggaCGCCGa -3'
miRNA:   3'- cCCGu----AGCUCCGCGUcUACCG------GCGGU- -5'
25517 3' -60.6 NC_005337.1 + 48676 0.66 0.688219
Target:  5'- uGGagAUCGucGCGCAGAUccgGGgCGCCAa -3'
miRNA:   3'- cCCg-UAGCucCGCGUCUA---CCgGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 49449 0.67 0.628188
Target:  5'- cGGCcgCGugcgcgaugcuGGCGUuGcUGGCCGCCAu -3'
miRNA:   3'- cCCGuaGCu----------CCGCGuCuACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 50379 0.72 0.338342
Target:  5'- cGGGCAcgggCGccuGGCGCGGG-GGCgCGCCGc -3'
miRNA:   3'- -CCCGUa---GCu--CCGCGUCUaCCG-GCGGU- -5'
25517 3' -60.6 NC_005337.1 + 51745 0.66 0.698116
Target:  5'- cGGCAggcugccCGcccuGGCGCuGGAcGGCCGCCc -3'
miRNA:   3'- cCCGUa------GCu---CCGCG-UCUaCCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 52174 0.7 0.45407
Target:  5'- cGGCuUCGAcgGcGCGCAGAcGGCCGaCCGc -3'
miRNA:   3'- cCCGuAGCU--C-CGCGUCUaCCGGC-GGU- -5'
25517 3' -60.6 NC_005337.1 + 53891 0.66 0.688219
Target:  5'- aGGCGUCGGGGCggccccgcugGCGG-UGGagaCGCUg -3'
miRNA:   3'- cCCGUAGCUCCG----------CGUCuACCg--GCGGu -5'
25517 3' -60.6 NC_005337.1 + 55931 0.66 0.688219
Target:  5'- cGGCAUCcugGAGGa-CGGAcgcgUGGUCGCCGc -3'
miRNA:   3'- cCCGUAG---CUCCgcGUCU----ACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 56109 0.68 0.548535
Target:  5'- aGGuGC-UCGAGGCGCAc--GGCauCGCCAg -3'
miRNA:   3'- -CC-CGuAGCUCCGCGUcuaCCG--GCGGU- -5'
25517 3' -60.6 NC_005337.1 + 56435 0.69 0.50032
Target:  5'- cGGGCAgcagcgCGuggacGGCGCGG-UGGCCGagaCCAa -3'
miRNA:   3'- -CCCGUa-----GCu----CCGCGUCuACCGGC---GGU- -5'
25517 3' -60.6 NC_005337.1 + 56928 0.66 0.688219
Target:  5'- cGGCucCGA-GCGCGGA-GGCgGCCAu -3'
miRNA:   3'- cCCGuaGCUcCGCGUCUaCCGgCGGU- -5'
25517 3' -60.6 NC_005337.1 + 57265 0.68 0.56824
Target:  5'- cGGGCA-CGGGGcCGCGcggGGCCGgCGc -3'
miRNA:   3'- -CCCGUaGCUCC-GCGUcuaCCGGCgGU- -5'
25517 3' -60.6 NC_005337.1 + 58387 0.66 0.688219
Target:  5'- --aCGUCGgcGGGCGCacguucucGGA-GGCCGCCAc -3'
miRNA:   3'- cccGUAGC--UCCGCG--------UCUaCCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 59192 0.71 0.369134
Target:  5'- gGGGCAccggCGAcggcuggauGGUGCAGAaGGCCGCgGa -3'
miRNA:   3'- -CCCGUa---GCU---------CCGCGUCUaCCGGCGgU- -5'
25517 3' -60.6 NC_005337.1 + 59334 0.66 0.688219
Target:  5'- cGGGUAcuUCGAGGaCGaccacuGGUgcgcGGCCGCCu -3'
miRNA:   3'- -CCCGU--AGCUCC-GCgu----CUA----CCGGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.