miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25517 3' -60.6 NC_005337.1 + 19197 0.72 0.353501
Target:  5'- cGGGCgugauGUCGaAGGCGCAGAaggGGCUgagcacgacgGCCAu -3'
miRNA:   3'- -CCCG-----UAGC-UCCGCGUCUa--CCGG----------CGGU- -5'
25517 3' -60.6 NC_005337.1 + 23091 0.68 0.542664
Target:  5'- cGGCAUCGuGcGCGCGG-UGGucagcaacuucaaccCCGCCGu -3'
miRNA:   3'- cCCGUAGCuC-CGCGUCuACC---------------GGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 23736 0.69 0.481555
Target:  5'- -cGCcgCGGagcGGCaGCAGAaGGCCGCCGa -3'
miRNA:   3'- ccCGuaGCU---CCG-CGUCUaCCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 24057 0.72 0.330942
Target:  5'- cGGGCGaCGcGGcCGCGGccgcGGCCGCCAu -3'
miRNA:   3'- -CCCGUaGCuCC-GCGUCua--CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 25692 0.66 0.64827
Target:  5'- cGGCGUCGcgcAGGaGCGGGUuguccGGCCGCg- -3'
miRNA:   3'- cCCGUAGC---UCCgCGUCUA-----CCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 28973 0.66 0.638231
Target:  5'- gGGGCGUgCGcagcgacugcGGGCaGCGGc-GGCCGCCc -3'
miRNA:   3'- -CCCGUA-GC----------UCCG-CGUCuaCCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 29052 0.68 0.548535
Target:  5'- cGGGCGcccgCGAGcGCGCAGcucagcGGCCcCCAg -3'
miRNA:   3'- -CCCGUa---GCUC-CGCGUCua----CCGGcGGU- -5'
25517 3' -60.6 NC_005337.1 + 30265 0.66 0.668301
Target:  5'- cGGGCAggCGguccacGGcGCGCAGGUGaG-CGCCAg -3'
miRNA:   3'- -CCCGUa-GC------UC-CGCGUCUAC-CgGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 31288 0.66 0.688219
Target:  5'- cGGGCAcgucCGAGGgGCAGAaguacccguacUGGCUGg-- -3'
miRNA:   3'- -CCCGUa---GCUCCgCGUCU-----------ACCGGCggu -5'
25517 3' -60.6 NC_005337.1 + 31601 0.67 0.628188
Target:  5'- -aGCAUCGAGaUGgGGAaggGGCCGCCc -3'
miRNA:   3'- ccCGUAGCUCcGCgUCUa--CCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 33671 0.69 0.463139
Target:  5'- uGGCcagCGAGGCGCcGA-GGCCGgCGg -3'
miRNA:   3'- cCCGua-GCUCCGCGuCUaCCGGCgGU- -5'
25517 3' -60.6 NC_005337.1 + 34725 0.68 0.562308
Target:  5'- aGGGCcuccucgcgcgagcaGUCGGcGGCGCAccgGGCCGCg- -3'
miRNA:   3'- -CCCG---------------UAGCU-CCGCGUcuaCCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 36892 0.73 0.302539
Target:  5'- cGGUucgCGcGGCGCGGcGUGGCCGUCAg -3'
miRNA:   3'- cCCGua-GCuCCGCGUC-UACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 38353 0.75 0.234207
Target:  5'- uGGaGCG-CGAGGCGCGcgcGGCCGCCGu -3'
miRNA:   3'- -CC-CGUaGCUCCGCGUcuaCCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 38476 0.69 0.480626
Target:  5'- cGGGCAgUGcGGcCGCuuccucucgaaggAGGUGGCCGCCc -3'
miRNA:   3'- -CCCGUaGCuCC-GCG-------------UCUACCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 38516 0.66 0.64827
Target:  5'- cGGGCG-CGccuGGUGCAG--GGCCcGCCGu -3'
miRNA:   3'- -CCCGUaGCu--CCGCGUCuaCCGG-CGGU- -5'
25517 3' -60.6 NC_005337.1 + 39643 0.66 0.692184
Target:  5'- cGGCggUGuuGGUGCuGAuauucugugcggccaUGGCCGCCAa -3'
miRNA:   3'- cCCGuaGCu-CCGCGuCU---------------ACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 39681 0.66 0.652282
Target:  5'- cGGGCAcguacgugcgcuucuUCGAcaCGCGGcUGGCCGCg- -3'
miRNA:   3'- -CCCGU---------------AGCUccGCGUCuACCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 40509 0.68 0.529049
Target:  5'- cGGCGaucgaagaCGAGGUGCGGcAUGcaGCCGCCGc -3'
miRNA:   3'- cCCGUa-------GCUCCGCGUC-UAC--CGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 40859 0.66 0.698116
Target:  5'- -cGCGUCGccgugcccccGGUGCAGAgGGCgGCCGu -3'
miRNA:   3'- ccCGUAGCu---------CCGCGUCUaCCGgCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.