miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25517 3' -60.6 NC_005337.1 + 89910 0.72 0.348903
Target:  5'- uGGGCggCGGGGCGUcgccccacuccucacAGAgGGCCGCgCGg -3'
miRNA:   3'- -CCCGuaGCUCCGCG---------------UCUaCCGGCG-GU- -5'
25517 3' -60.6 NC_005337.1 + 19197 0.72 0.353501
Target:  5'- cGGGCgugauGUCGaAGGCGCAGAaggGGCUgagcacgacgGCCAu -3'
miRNA:   3'- -CCCG-----UAGC-UCCGCGUCUa--CCGG----------CGGU- -5'
25517 3' -60.6 NC_005337.1 + 99656 0.71 0.361259
Target:  5'- cGGCAUCGccGCGCGGcugGGCgCGCCc -3'
miRNA:   3'- cCCGUAGCucCGCGUCua-CCG-GCGGu -5'
25517 3' -60.6 NC_005337.1 + 124781 0.71 0.361259
Target:  5'- cGGcCAUCGAGcucugcGCGCAGAUGGgCCGgCGg -3'
miRNA:   3'- cCC-GUAGCUC------CGCGUCUACC-GGCgGU- -5'
25517 3' -60.6 NC_005337.1 + 59192 0.71 0.369134
Target:  5'- gGGGCAccggCGAcggcuggauGGUGCAGAaGGCCGCgGa -3'
miRNA:   3'- -CCCGUa---GCU---------CCGCGUCUaCCGGCGgU- -5'
25517 3' -60.6 NC_005337.1 + 111083 0.71 0.377126
Target:  5'- cGGGCGU-GAGGUGCGccaGGCCGuCCAg -3'
miRNA:   3'- -CCCGUAgCUCCGCGUcuaCCGGC-GGU- -5'
25517 3' -60.6 NC_005337.1 + 94090 0.71 0.385234
Target:  5'- cGGGCAccCGAGGgGCGG-UGGaCGCCu -3'
miRNA:   3'- -CCCGUa-GCUCCgCGUCuACCgGCGGu -5'
25517 3' -60.6 NC_005337.1 + 83970 0.71 0.385234
Target:  5'- aGGGCAgCGGcGGCGCGGGcgGGCaCGUCu -3'
miRNA:   3'- -CCCGUaGCU-CCGCGUCUa-CCG-GCGGu -5'
25517 3' -60.6 NC_005337.1 + 84892 0.71 0.401791
Target:  5'- cGGCcgCGGGGgGCGGugcggcGGUCGCCGc -3'
miRNA:   3'- cCCGuaGCUCCgCGUCua----CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 77331 0.7 0.418794
Target:  5'- aGGUccCGcGGCG-AGAUGGCCGCCu -3'
miRNA:   3'- cCCGuaGCuCCGCgUCUACCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 52174 0.7 0.45407
Target:  5'- cGGCuUCGAcgGcGCGCAGAcGGCCGaCCGc -3'
miRNA:   3'- cCCGuAGCU--C-CGCGUCUaCCGGC-GGU- -5'
25517 3' -60.6 NC_005337.1 + 11315 0.69 0.463139
Target:  5'- cGGGCGUU--GGCGCAGA-GGuCCGUCc -3'
miRNA:   3'- -CCCGUAGcuCCGCGUCUaCC-GGCGGu -5'
25517 3' -60.6 NC_005337.1 + 33671 0.69 0.463139
Target:  5'- uGGCcagCGAGGCGCcGA-GGCCGgCGg -3'
miRNA:   3'- cCCGua-GCUCCGCGuCUaCCGGCgGU- -5'
25517 3' -60.6 NC_005337.1 + 83331 0.69 0.472302
Target:  5'- gGGGCGcggcgCGAGGCGCcccGGGaGGCCGaCUg -3'
miRNA:   3'- -CCCGUa----GCUCCGCG---UCUaCCGGC-GGu -5'
25517 3' -60.6 NC_005337.1 + 38476 0.69 0.480626
Target:  5'- cGGGCAgUGcGGcCGCuuccucucgaaggAGGUGGCCGCCc -3'
miRNA:   3'- -CCCGUaGCuCC-GCG-------------UCUACCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 115089 0.69 0.480626
Target:  5'- uGGGCAUCGuGGagucCGGAcacccggUGGCCGUCGc -3'
miRNA:   3'- -CCCGUAGCuCCgc--GUCU-------ACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 23736 0.69 0.481555
Target:  5'- -cGCcgCGGagcGGCaGCAGAaGGCCGCCGa -3'
miRNA:   3'- ccCGuaGCU---CCG-CGUCUaCCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 3422 0.69 0.50032
Target:  5'- aGGGcCGUCGGGuCGCAGccgagcucuAUGaGCCGCCu -3'
miRNA:   3'- -CCC-GUAGCUCcGCGUC---------UAC-CGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 56435 0.69 0.50032
Target:  5'- cGGGCAgcagcgCGuggacGGCGCGG-UGGCCGagaCCAa -3'
miRNA:   3'- -CCCGUa-----GCu----CCGCGUCuACCGGC---GGU- -5'
25517 3' -60.6 NC_005337.1 + 2201 0.69 0.50032
Target:  5'- cGGCGgacgCG-GGCGCGGcccgGGCCGCgAg -3'
miRNA:   3'- cCCGUa---GCuCCGCGUCua--CCGGCGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.