miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25517 3' -60.6 NC_005337.1 + 41603 0.66 0.658295
Target:  5'- aGGGCgugGUCGuGGCGaAGGaGGCCGUg- -3'
miRNA:   3'- -CCCG---UAGCuCCGCgUCUaCCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 929 0.66 0.658295
Target:  5'- cGGCggCGAGGCgGCGGAgcgcggacaugcUGGCgGCg- -3'
miRNA:   3'- cCCGuaGCUCCG-CGUCU------------ACCGgCGgu -5'
25517 3' -60.6 NC_005337.1 + 108621 0.66 0.658295
Target:  5'- cGGCGcCGAGGUGgAGAUcgacgcGGCCGUg- -3'
miRNA:   3'- cCCGUaGCUCCGCgUCUA------CCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 2304 0.66 0.658295
Target:  5'- cGGgGUCGGGaGCGUcGGUGGCgGCa- -3'
miRNA:   3'- cCCgUAGCUC-CGCGuCUACCGgCGgu -5'
25517 3' -60.6 NC_005337.1 + 102668 0.66 0.658295
Target:  5'- cGGGCGcuacuUCGAGGCGC---UGGCCa--- -3'
miRNA:   3'- -CCCGU-----AGCUCCGCGucuACCGGcggu -5'
25517 3' -60.6 NC_005337.1 + 929 0.66 0.658295
Target:  5'- cGGCggCGAGGCgGCGGAgcgcggacaugcUGGCgGCg- -3'
miRNA:   3'- cCCGuaGCUCCG-CGUCU------------ACCGgCGgu -5'
25517 3' -60.6 NC_005337.1 + 131761 0.66 0.658295
Target:  5'- cGGGCcucCGAGGUGCGGca-GCUGCUg -3'
miRNA:   3'- -CCCGua-GCUCCGCGUCuacCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 2634 0.66 0.658295
Target:  5'- cGGGCuccUCGAagcggaagguGGCGCc---GGCCGCCu -3'
miRNA:   3'- -CCCGu--AGCU----------CCGCGucuaCCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 7846 0.66 0.658295
Target:  5'- cGGuGCG-CGGGaGCGUGGAguccaggucGGCCGCCu -3'
miRNA:   3'- -CC-CGUaGCUC-CGCGUCUa--------CCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 47319 0.66 0.658295
Target:  5'- uGGUcauguUCGAGGCGCGcGUGGUcauggaCGCCGa -3'
miRNA:   3'- cCCGu----AGCUCCGCGUcUACCG------GCGGU- -5'
25517 3' -60.6 NC_005337.1 + 65752 0.66 0.652282
Target:  5'- cGGCA-CGcucagagccgagcgcGGGCGCAcccacGGCCGCCAg -3'
miRNA:   3'- cCCGUaGC---------------UCCGCGUcua--CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 39681 0.66 0.652282
Target:  5'- cGGGCAcguacgugcgcuucuUCGAcaCGCGGcUGGCCGCg- -3'
miRNA:   3'- -CCCGU---------------AGCUccGCGUCuACCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 25692 0.66 0.64827
Target:  5'- cGGCGUCGcgcAGGaGCGGGUuguccGGCCGCg- -3'
miRNA:   3'- cCCGUAGC---UCCgCGUCUA-----CCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 82285 0.66 0.64827
Target:  5'- cGGCGUCGuaguGGUGCcccgccGCCGCCAg -3'
miRNA:   3'- cCCGUAGCu---CCGCGucuac-CGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 76322 0.66 0.64827
Target:  5'- cGGGC-UCGuaucccGCGCAGAgcaGGCUgGCCAg -3'
miRNA:   3'- -CCCGuAGCuc----CGCGUCUa--CCGG-CGGU- -5'
25517 3' -60.6 NC_005337.1 + 76238 0.66 0.64827
Target:  5'- cGGCGUUGAGgaGCGCAc--GGCCGUCc -3'
miRNA:   3'- cCCGUAGCUC--CGCGUcuaCCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 38516 0.66 0.64827
Target:  5'- cGGGCG-CGccuGGUGCAG--GGCCcGCCGu -3'
miRNA:   3'- -CCCGUaGCu--CCGCGUCuaCCGG-CGGU- -5'
25517 3' -60.6 NC_005337.1 + 99025 0.66 0.64827
Target:  5'- cGGCcugCGAGGCGC---UGGaCGCCAg -3'
miRNA:   3'- cCCGua-GCUCCGCGucuACCgGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 107847 0.66 0.64827
Target:  5'- cGGCGUgGAGaCGaAGAUcgcGGCCGCCGc -3'
miRNA:   3'- cCCGUAgCUCcGCgUCUA---CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 80330 0.66 0.647266
Target:  5'- cGGCA-C-AGGCGCGagcagaacuccccGAUGGCCGCa- -3'
miRNA:   3'- cCCGUaGcUCCGCGU-------------CUACCGGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.