miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25517 3' -60.6 NC_005337.1 + 99474 0.66 0.645259
Target:  5'- uGGCcacccgCGAcGCGCAGAUGGCgaccaugauccuguCGCCGa -3'
miRNA:   3'- cCCGua----GCUcCGCGUCUACCG--------------GCGGU- -5'
25517 3' -60.6 NC_005337.1 + 89243 0.66 0.642248
Target:  5'- cGGaGCAUCGugcGGCaGUccacgcuccccacguAGAUGGCCGCg- -3'
miRNA:   3'- -CC-CGUAGCu--CCG-CG---------------UCUACCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 28973 0.66 0.638231
Target:  5'- gGGGCGUgCGcagcgacugcGGGCaGCGGc-GGCCGCCc -3'
miRNA:   3'- -CCCGUA-GC----------UCCG-CGUCuaCCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 5868 0.67 0.628188
Target:  5'- cGGCugCGuGGCG-AGAgcGGCCGCCAg -3'
miRNA:   3'- cCCGuaGCuCCGCgUCUa-CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 44479 0.67 0.628188
Target:  5'- aGGCcaguUCGAGGCGC----GGCCGCg- -3'
miRNA:   3'- cCCGu---AGCUCCGCGucuaCCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 31601 0.67 0.628188
Target:  5'- -aGCAUCGAGaUGgGGAaggGGCCGCCc -3'
miRNA:   3'- ccCGUAGCUCcGCgUCUa--CCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 49449 0.67 0.628188
Target:  5'- cGGCcgCGugcgcgaugcuGGCGUuGcUGGCCGCCAu -3'
miRNA:   3'- cCCGuaGCu----------CCGCGuCuACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 124293 0.67 0.627184
Target:  5'- aGGuaAUCGAGGaagaGCuagccgaGGA-GGCCGCCGu -3'
miRNA:   3'- -CCcgUAGCUCCg---CG-------UCUaCCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 86466 0.67 0.608119
Target:  5'- cGGCGUCGAaGCGCgAGG-GGUCGCa- -3'
miRNA:   3'- cCCGUAGCUcCGCG-UCUaCCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 59351 0.67 0.608119
Target:  5'- cGGCcgCGc-GCGC-GAaGGCCGCCAg -3'
miRNA:   3'- cCCGuaGCucCGCGuCUaCCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 131167 0.67 0.598107
Target:  5'- cGGCcgcgGUCGcGGuCGCGGAgucgcUGGCCGUCGc -3'
miRNA:   3'- cCCG----UAGCuCC-GCGUCU-----ACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 75617 0.67 0.598107
Target:  5'- gGGaGCGcCGAGGaCGC-GcgGGCCGUCGu -3'
miRNA:   3'- -CC-CGUaGCUCC-GCGuCuaCCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 114553 0.67 0.598107
Target:  5'- aGGCcaucGUgGAGGCGCggccgcAGAUGG-CGCCGg -3'
miRNA:   3'- cCCG----UAgCUCCGCG------UCUACCgGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 8717 0.67 0.598107
Target:  5'- gGGGCguccgccccacGUCGuccuuGGCGCGGAUGucGgCGCCGu -3'
miRNA:   3'- -CCCG-----------UAGCu----CCGCGUCUAC--CgGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 75905 0.67 0.598107
Target:  5'- -aGCAcccCGAGGUGUcGccGGCCGCCAg -3'
miRNA:   3'- ccCGUa--GCUCCGCGuCuaCCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 128495 0.67 0.598107
Target:  5'- cGGGCGUgCGucGCGUAcGUGGUCGCgCGg -3'
miRNA:   3'- -CCCGUA-GCucCGCGUcUACCGGCG-GU- -5'
25517 3' -60.6 NC_005337.1 + 82395 0.67 0.598107
Target:  5'- gGGGCGgaagGAGGCGauggcgaAGAUGGagGCCAg -3'
miRNA:   3'- -CCCGUag--CUCCGCg------UCUACCggCGGU- -5'
25517 3' -60.6 NC_005337.1 + 117572 0.67 0.588118
Target:  5'- -cGCGUCacccGGCaGCGGA-GGCCGCCGu -3'
miRNA:   3'- ccCGUAGcu--CCG-CGUCUaCCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 45342 0.67 0.588118
Target:  5'- aGGCGgaucaUGGGGCGCgAGGUGGUgcucaGCCAg -3'
miRNA:   3'- cCCGUa----GCUCCGCG-UCUACCGg----CGGU- -5'
25517 3' -60.6 NC_005337.1 + 132369 0.67 0.588118
Target:  5'- aGGCGacugCGGGGUuccCGGA-GGCCGCCGa -3'
miRNA:   3'- cCCGUa---GCUCCGc--GUCUaCCGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.