miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25517 3' -60.6 NC_005337.1 + 124838 1.1 0.000796
Target:  5'- cGGGCAUCGAGGCGCAGAUGGCCGCCAc -3'
miRNA:   3'- -CCCGUAGCUCCGCGUCUACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 64018 0.87 0.032955
Target:  5'- cGGGCAgCGAGuccaacGCGCAGAUGGCCGCCu -3'
miRNA:   3'- -CCCGUaGCUC------CGCGUCUACCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 105503 0.8 0.097542
Target:  5'- cGGGaguUCGuGGCGCAGAUcaucgcGGCCGCCAu -3'
miRNA:   3'- -CCCgu-AGCuCCGCGUCUA------CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 75982 0.78 0.139644
Target:  5'- cGGCAcguccUCGaAGGCGaAGGUGGCCGCCGu -3'
miRNA:   3'- cCCGU-----AGC-UCCGCgUCUACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 119564 0.76 0.188372
Target:  5'- uGGGCGUCGuGGagaGCAGGuacccgcaccUGGUCGCCGa -3'
miRNA:   3'- -CCCGUAGCuCCg--CGUCU----------ACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 127682 0.76 0.188372
Target:  5'- uGGGCGcCGAccuGGCGCcGGUGGCCGCg- -3'
miRNA:   3'- -CCCGUaGCU---CCGCGuCUACCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 96291 0.76 0.197823
Target:  5'- cGGCGUUGGGGUGCAuGAucugcaUGGCCGCgCAg -3'
miRNA:   3'- cCCGUAGCUCCGCGU-CU------ACCGGCG-GU- -5'
25517 3' -60.6 NC_005337.1 + 125500 0.75 0.234207
Target:  5'- cGGCAUCGAGGUGgAGGUcgugcGGCUGCUc -3'
miRNA:   3'- cCCGUAGCUCCGCgUCUA-----CCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 38353 0.75 0.234207
Target:  5'- uGGaGCG-CGAGGCGCGcgcGGCCGCCGu -3'
miRNA:   3'- -CC-CGUaGCUCCGCGUcuaCCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 12102 0.74 0.245589
Target:  5'- cGGGCAcgcuUCGGGGuUGUAGAUGGCgGCg- -3'
miRNA:   3'- -CCCGU----AGCUCC-GCGUCUACCGgCGgu -5'
25517 3' -60.6 NC_005337.1 + 133068 0.74 0.25145
Target:  5'- -cGCGUaCGcGGCGCcGGUGGCCGCCu -3'
miRNA:   3'- ccCGUA-GCuCCGCGuCUACCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 74906 0.74 0.257426
Target:  5'- gGGGCGU-GAuGGCGCGGcUGGCgGCCu -3'
miRNA:   3'- -CCCGUAgCU-CCGCGUCuACCGgCGGu -5'
25517 3' -60.6 NC_005337.1 + 11524 0.74 0.263518
Target:  5'- cGGGCA-----GCGCAgGGUGGCCGCCAg -3'
miRNA:   3'- -CCCGUagcucCGCGU-CUACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 11063 0.73 0.282495
Target:  5'- -aGCAUcgCGAGGcCGCAGAUcGGUCGCCGc -3'
miRNA:   3'- ccCGUA--GCUCC-GCGUCUA-CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 36892 0.73 0.302539
Target:  5'- cGGUucgCGcGGCGCGGcGUGGCCGUCAg -3'
miRNA:   3'- cCCGua-GCuCCGCGUC-UACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 24057 0.72 0.330942
Target:  5'- cGGGCGaCGcGGcCGCGGccgcGGCCGCCAu -3'
miRNA:   3'- -CCCGUaGCuCC-GCGUCua--CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 68124 0.72 0.338342
Target:  5'- gGGGUcgCGGGGC-CGG-UGGCCGCg- -3'
miRNA:   3'- -CCCGuaGCUCCGcGUCuACCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 50379 0.72 0.338342
Target:  5'- cGGGCAcgggCGccuGGCGCGGG-GGCgCGCCGc -3'
miRNA:   3'- -CCCGUa---GCu--CCGCGUCUaCCG-GCGGU- -5'
25517 3' -60.6 NC_005337.1 + 8353 0.72 0.338342
Target:  5'- gGGGCAaucugCGAGGCGCGGcacgagcucccaAUGGCCagGCUg -3'
miRNA:   3'- -CCCGUa----GCUCCGCGUC------------UACCGG--CGGu -5'
25517 3' -60.6 NC_005337.1 + 9414 0.72 0.345862
Target:  5'- gGGGaUGUUGAGcuCGCGGGUGGCgGCCAu -3'
miRNA:   3'- -CCC-GUAGCUCc-GCGUCUACCGgCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.