miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25517 3' -60.6 NC_005337.1 + 56435 0.69 0.50032
Target:  5'- cGGGCAgcagcgCGuggacGGCGCGG-UGGCCGagaCCAa -3'
miRNA:   3'- -CCCGUa-----GCu----CCGCGUCuACCGGC---GGU- -5'
25517 3' -60.6 NC_005337.1 + 99656 0.71 0.361259
Target:  5'- cGGCAUCGccGCGCGGcugGGCgCGCCc -3'
miRNA:   3'- cCCGUAGCucCGCGUCua-CCG-GCGGu -5'
25517 3' -60.6 NC_005337.1 + 59192 0.71 0.369134
Target:  5'- gGGGCAccggCGAcggcuggauGGUGCAGAaGGCCGCgGa -3'
miRNA:   3'- -CCCGUa---GCU---------CCGCGUCUaCCGGCGgU- -5'
25517 3' -60.6 NC_005337.1 + 83970 0.71 0.385234
Target:  5'- aGGGCAgCGGcGGCGCGGGcgGGCaCGUCu -3'
miRNA:   3'- -CCCGUaGCU-CCGCGUCUa-CCG-GCGGu -5'
25517 3' -60.6 NC_005337.1 + 94090 0.71 0.385234
Target:  5'- cGGGCAccCGAGGgGCGG-UGGaCGCCu -3'
miRNA:   3'- -CCCGUa-GCUCCgCGUCuACCgGCGGu -5'
25517 3' -60.6 NC_005337.1 + 84892 0.71 0.401791
Target:  5'- cGGCcgCGGGGgGCGGugcggcGGUCGCCGc -3'
miRNA:   3'- cCCGuaGCUCCgCGUCua----CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 52174 0.7 0.45407
Target:  5'- cGGCuUCGAcgGcGCGCAGAcGGCCGaCCGc -3'
miRNA:   3'- cCCGuAGCU--C-CGCGUCUaCCGGC-GGU- -5'
25517 3' -60.6 NC_005337.1 + 83331 0.69 0.472302
Target:  5'- gGGGCGcggcgCGAGGCGCcccGGGaGGCCGaCUg -3'
miRNA:   3'- -CCCGUa----GCUCCGCG---UCUaCCGGC-GGu -5'
25517 3' -60.6 NC_005337.1 + 3422 0.69 0.50032
Target:  5'- aGGGcCGUCGGGuCGCAGccgagcucuAUGaGCCGCCu -3'
miRNA:   3'- -CCC-GUAGCUCcGCGUC---------UAC-CGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 124781 0.71 0.361259
Target:  5'- cGGcCAUCGAGcucugcGCGCAGAUGGgCCGgCGg -3'
miRNA:   3'- cCC-GUAGCUC------CGCGUCUACC-GGCgGU- -5'
25517 3' -60.6 NC_005337.1 + 9414 0.72 0.345862
Target:  5'- gGGGaUGUUGAGcuCGCGGGUGGCgGCCAu -3'
miRNA:   3'- -CCC-GUAGCUCc-GCGUCUACCGgCGGU- -5'
25517 3' -60.6 NC_005337.1 + 50379 0.72 0.338342
Target:  5'- cGGGCAcgggCGccuGGCGCGGG-GGCgCGCCGc -3'
miRNA:   3'- -CCCGUa---GCu--CCGCGUCUaCCG-GCGGU- -5'
25517 3' -60.6 NC_005337.1 + 75982 0.78 0.139644
Target:  5'- cGGCAcguccUCGaAGGCGaAGGUGGCCGCCGu -3'
miRNA:   3'- cCCGU-----AGC-UCCGCgUCUACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 96291 0.76 0.197823
Target:  5'- cGGCGUUGGGGUGCAuGAucugcaUGGCCGCgCAg -3'
miRNA:   3'- cCCGUAGCUCCGCGU-CU------ACCGGCG-GU- -5'
25517 3' -60.6 NC_005337.1 + 125500 0.75 0.234207
Target:  5'- cGGCAUCGAGGUGgAGGUcgugcGGCUGCUc -3'
miRNA:   3'- cCCGUAGCUCCGCgUCUA-----CCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 38353 0.75 0.234207
Target:  5'- uGGaGCG-CGAGGCGCGcgcGGCCGCCGu -3'
miRNA:   3'- -CC-CGUaGCUCCGCGUcuaCCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 133068 0.74 0.25145
Target:  5'- -cGCGUaCGcGGCGCcGGUGGCCGCCu -3'
miRNA:   3'- ccCGUA-GCuCCGCGuCUACCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 74906 0.74 0.257426
Target:  5'- gGGGCGU-GAuGGCGCGGcUGGCgGCCu -3'
miRNA:   3'- -CCCGUAgCU-CCGCGUCuACCGgCGGu -5'
25517 3' -60.6 NC_005337.1 + 11063 0.73 0.282495
Target:  5'- -aGCAUcgCGAGGcCGCAGAUcGGUCGCCGc -3'
miRNA:   3'- ccCGUA--GCUCC-GCGUCUA-CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 68124 0.72 0.338342
Target:  5'- gGGGUcgCGGGGC-CGG-UGGCCGCg- -3'
miRNA:   3'- -CCCGuaGCUCCGcGUCuACCGGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.