miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25517 3' -60.6 NC_005337.1 + 124838 1.1 0.000796
Target:  5'- cGGGCAUCGAGGCGCAGAUGGCCGCCAc -3'
miRNA:   3'- -CCCGUAGCUCCGCGUCUACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 23736 0.69 0.481555
Target:  5'- -cGCcgCGGagcGGCaGCAGAaGGCCGCCGa -3'
miRNA:   3'- ccCGuaGCU---CCG-CGUCUaCCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 860 0.68 0.529049
Target:  5'- cGGGCAgcgCG-GGCGCGGccgGGCggaagagcgCGCCGa -3'
miRNA:   3'- -CCCGUa--GCuCCGCGUCua-CCG---------GCGGU- -5'
25517 3' -60.6 NC_005337.1 + 130724 0.66 0.698116
Target:  5'- uGGaGCucGUCGA-GCGCucGUGGCCGCUg -3'
miRNA:   3'- -CC-CG--UAGCUcCGCGucUACCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 12102 0.74 0.245589
Target:  5'- cGGGCAcgcuUCGGGGuUGUAGAUGGCgGCg- -3'
miRNA:   3'- -CCCGU----AGCUCC-GCGUCUACCGgCGgu -5'
25517 3' -60.6 NC_005337.1 + 11524 0.74 0.263518
Target:  5'- cGGGCA-----GCGCAgGGUGGCCGCCAg -3'
miRNA:   3'- -CCCGUagcucCGCGU-CUACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 24057 0.72 0.330942
Target:  5'- cGGGCGaCGcGGcCGCGGccgcGGCCGCCAu -3'
miRNA:   3'- -CCCGUaGCuCC-GCGUCua--CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 8353 0.72 0.338342
Target:  5'- gGGGCAaucugCGAGGCGCGGcacgagcucccaAUGGCCagGCUg -3'
miRNA:   3'- -CCCGUa----GCUCCGCGUC------------UACCGG--CGGu -5'
25517 3' -60.6 NC_005337.1 + 111083 0.71 0.377126
Target:  5'- cGGGCGU-GAGGUGCGccaGGCCGuCCAg -3'
miRNA:   3'- -CCCGUAgCUCCGCGUcuaCCGGC-GGU- -5'
25517 3' -60.6 NC_005337.1 + 38476 0.69 0.480626
Target:  5'- cGGGCAgUGcGGcCGCuuccucucgaaggAGGUGGCCGCCc -3'
miRNA:   3'- -CCCGUaGCuCC-GCG-------------UCUACCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 33671 0.69 0.463139
Target:  5'- uGGCcagCGAGGCGCcGA-GGCCGgCGg -3'
miRNA:   3'- cCCGua-GCUCCGCGuCUaCCGGCgGU- -5'
25517 3' -60.6 NC_005337.1 + 19197 0.72 0.353501
Target:  5'- cGGGCgugauGUCGaAGGCGCAGAaggGGCUgagcacgacgGCCAu -3'
miRNA:   3'- -CCCG-----UAGC-UCCGCGUCUa--CCGG----------CGGU- -5'
25517 3' -60.6 NC_005337.1 + 105503 0.8 0.097542
Target:  5'- cGGGaguUCGuGGCGCAGAUcaucgcGGCCGCCAu -3'
miRNA:   3'- -CCCgu-AGCuCCGCGUCUA------CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 11315 0.69 0.463139
Target:  5'- cGGGCGUU--GGCGCAGA-GGuCCGUCc -3'
miRNA:   3'- -CCCGUAGcuCCGCGUCUaCC-GGCGGu -5'
25517 3' -60.6 NC_005337.1 + 119564 0.76 0.188372
Target:  5'- uGGGCGUCGuGGagaGCAGGuacccgcaccUGGUCGCCGa -3'
miRNA:   3'- -CCCGUAGCuCCg--CGUCU----------ACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 89910 0.72 0.348903
Target:  5'- uGGGCggCGGGGCGUcgccccacuccucacAGAgGGCCGCgCGg -3'
miRNA:   3'- -CCCGuaGCUCCGCG---------------UCUaCCGGCG-GU- -5'
25517 3' -60.6 NC_005337.1 + 115089 0.69 0.480626
Target:  5'- uGGGCAUCGuGGagucCGGAcacccggUGGCCGUCGc -3'
miRNA:   3'- -CCCGUAGCuCCgc--GUCU-------ACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 2201 0.69 0.50032
Target:  5'- cGGCGgacgCG-GGCGCGGcccgGGCCGCgAg -3'
miRNA:   3'- cCCGUa---GCuCCGCGUCua--CCGGCGgU- -5'
25517 3' -60.6 NC_005337.1 + 127682 0.76 0.188372
Target:  5'- uGGGCGcCGAccuGGCGCcGGUGGCCGCg- -3'
miRNA:   3'- -CCCGUaGCU---CCGCGuCUACCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 36892 0.73 0.302539
Target:  5'- cGGUucgCGcGGCGCGGcGUGGCCGUCAg -3'
miRNA:   3'- cCCGua-GCuCCGCGUC-UACCGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.