Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25517 | 3' | -60.6 | NC_005337.1 | + | 25692 | 0.66 | 0.64827 |
Target: 5'- cGGCGUCGcgcAGGaGCGGGUuguccGGCCGCg- -3' miRNA: 3'- cCCGUAGC---UCCgCGUCUA-----CCGGCGgu -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 28973 | 0.66 | 0.638231 |
Target: 5'- gGGGCGUgCGcagcgacugcGGGCaGCGGc-GGCCGCCc -3' miRNA: 3'- -CCCGUA-GC----------UCCG-CGUCuaCCGGCGGu -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 68262 | 0.66 | 0.698116 |
Target: 5'- uGGGCgagcGUCGAGGacuucgacgucUGCGGccGGCCGgCGg -3' miRNA: 3'- -CCCG----UAGCUCC-----------GCGUCuaCCGGCgGU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 56928 | 0.66 | 0.688219 |
Target: 5'- cGGCucCGA-GCGCGGA-GGCgGCCAu -3' miRNA: 3'- cCCGuaGCUcCGCGUCUaCCGgCGGU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 2551 | 0.66 | 0.688219 |
Target: 5'- cGGGUgaagaaguaGUCGuacaGCGCGGAcuccaUGGCgGCCAg -3' miRNA: 3'- -CCCG---------UAGCuc--CGCGUCU-----ACCGgCGGU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 51745 | 0.66 | 0.698116 |
Target: 5'- cGGCAggcugccCGcccuGGCGCuGGAcGGCCGCCc -3' miRNA: 3'- cCCGUa------GCu---CCGCG-UCUaCCGGCGGu -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 74243 | 0.66 | 0.698116 |
Target: 5'- aGGGCggGUCGccGCGCGGGUcuccGCgCGCCGa -3' miRNA: 3'- -CCCG--UAGCucCGCGUCUAc---CG-GCGGU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 40859 | 0.66 | 0.698116 |
Target: 5'- -cGCGUCGccgugcccccGGUGCAGAgGGCgGCCGu -3' miRNA: 3'- ccCGUAGCu---------CCGCGUCUaCCGgCGGU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 80330 | 0.66 | 0.647266 |
Target: 5'- cGGCA-C-AGGCGCGagcagaacuccccGAUGGCCGCa- -3' miRNA: 3'- cCCGUaGcUCCGCGU-------------CUACCGGCGgu -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 130724 | 0.66 | 0.698116 |
Target: 5'- uGGaGCucGUCGA-GCGCucGUGGCCGCUg -3' miRNA: 3'- -CC-CG--UAGCUcCGCGucUACCGGCGGu -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 59334 | 0.66 | 0.688219 |
Target: 5'- cGGGUAcuUCGAGGaCGaccacuGGUgcgcGGCCGCCu -3' miRNA: 3'- -CCCGU--AGCUCC-GCgu----CUA----CCGGCGGu -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 55931 | 0.66 | 0.688219 |
Target: 5'- cGGCAUCcugGAGGa-CGGAcgcgUGGUCGCCGc -3' miRNA: 3'- cCCGUAG---CUCCgcGUCU----ACCGGCGGU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 30265 | 0.66 | 0.668301 |
Target: 5'- cGGGCAggCGguccacGGcGCGCAGGUGaG-CGCCAg -3' miRNA: 3'- -CCCGUa-GC------UC-CGCGUCUAC-CgGCGGU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 929 | 0.66 | 0.658295 |
Target: 5'- cGGCggCGAGGCgGCGGAgcgcggacaugcUGGCgGCg- -3' miRNA: 3'- cCCGuaGCUCCG-CGUCU------------ACCGgCGgu -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 7846 | 0.66 | 0.658295 |
Target: 5'- cGGuGCG-CGGGaGCGUGGAguccaggucGGCCGCCu -3' miRNA: 3'- -CC-CGUaGCUC-CGCGUCUa--------CCGGCGGu -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 1319 | 0.66 | 0.678279 |
Target: 5'- cGGcGCAg-GAGGUccagcgcgcuGCAGAgcgGGUCGCCGa -3' miRNA: 3'- -CC-CGUagCUCCG----------CGUCUa--CCGGCGGU- -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 63687 | 0.66 | 0.668301 |
Target: 5'- cGGCAUgGGGGCGCGGGc-GCUGUUc -3' miRNA: 3'- cCCGUAgCUCCGCGUCUacCGGCGGu -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 39681 | 0.66 | 0.652282 |
Target: 5'- cGGGCAcguacgugcgcuucuUCGAcaCGCGGcUGGCCGCg- -3' miRNA: 3'- -CCCGU---------------AGCUccGCGUCuACCGGCGgu -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 102668 | 0.66 | 0.658295 |
Target: 5'- cGGGCGcuacuUCGAGGCGC---UGGCCa--- -3' miRNA: 3'- -CCCGU-----AGCUCCGCGucuACCGGcggu -5' |
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25517 | 3' | -60.6 | NC_005337.1 | + | 47319 | 0.66 | 0.658295 |
Target: 5'- uGGUcauguUCGAGGCGCGcGUGGUcauggaCGCCGa -3' miRNA: 3'- cCCGu----AGCUCCGCGUcUACCG------GCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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