miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25517 3' -60.6 NC_005337.1 + 860 0.68 0.529049
Target:  5'- cGGGCAgcgCG-GGCGCGGccgGGCggaagagcgCGCCGa -3'
miRNA:   3'- -CCCGUa--GCuCCGCGUCua-CCG---------GCGGU- -5'
25517 3' -60.6 NC_005337.1 + 860 0.68 0.529049
Target:  5'- cGGGCAgcgCG-GGCGCGGccgGGCggaagagcgCGCCGa -3'
miRNA:   3'- -CCCGUa--GCuCCGCGUCua-CCG---------GCGGU- -5'
25517 3' -60.6 NC_005337.1 + 929 0.66 0.658295
Target:  5'- cGGCggCGAGGCgGCGGAgcgcggacaugcUGGCgGCg- -3'
miRNA:   3'- cCCGuaGCUCCG-CGUCU------------ACCGgCGgu -5'
25517 3' -60.6 NC_005337.1 + 929 0.66 0.658295
Target:  5'- cGGCggCGAGGCgGCGGAgcgcggacaugcUGGCgGCg- -3'
miRNA:   3'- cCCGuaGCUCCG-CGUCU------------ACCGgCGgu -5'
25517 3' -60.6 NC_005337.1 + 1319 0.66 0.678279
Target:  5'- cGGcGCAg-GAGGUccagcgcgcuGCAGAgcgGGUCGCCGa -3'
miRNA:   3'- -CC-CGUagCUCCG----------CGUCUa--CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 2201 0.69 0.50032
Target:  5'- cGGCGgacgCG-GGCGCGGcccgGGCCGCgAg -3'
miRNA:   3'- cCCGUa---GCuCCGCGUCua--CCGGCGgU- -5'
25517 3' -60.6 NC_005337.1 + 2304 0.66 0.658295
Target:  5'- cGGgGUCGGGaGCGUcGGUGGCgGCa- -3'
miRNA:   3'- cCCgUAGCUC-CGCGuCUACCGgCGgu -5'
25517 3' -60.6 NC_005337.1 + 2551 0.66 0.688219
Target:  5'- cGGGUgaagaaguaGUCGuacaGCGCGGAcuccaUGGCgGCCAg -3'
miRNA:   3'- -CCCG---------UAGCuc--CGCGUCU-----ACCGgCGGU- -5'
25517 3' -60.6 NC_005337.1 + 2634 0.66 0.658295
Target:  5'- cGGGCuccUCGAagcggaagguGGCGCc---GGCCGCCu -3'
miRNA:   3'- -CCCGu--AGCU----------CCGCGucuaCCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 3422 0.69 0.50032
Target:  5'- aGGGcCGUCGGGuCGCAGccgagcucuAUGaGCCGCCu -3'
miRNA:   3'- -CCC-GUAGCUCcGCGUC---------UAC-CGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 5868 0.67 0.628188
Target:  5'- cGGCugCGuGGCG-AGAgcGGCCGCCAg -3'
miRNA:   3'- cCCGuaGCuCCGCgUCUa-CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 7846 0.66 0.658295
Target:  5'- cGGuGCG-CGGGaGCGUGGAguccaggucGGCCGCCu -3'
miRNA:   3'- -CC-CGUaGCUC-CGCGUCUa--------CCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 8123 0.66 0.688219
Target:  5'- cGGCuaucagcgaGUCGGGGaCGCcgGGcAUGGCCGCg- -3'
miRNA:   3'- cCCG---------UAGCUCC-GCG--UC-UACCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 8353 0.72 0.338342
Target:  5'- gGGGCAaucugCGAGGCGCGGcacgagcucccaAUGGCCagGCUg -3'
miRNA:   3'- -CCCGUa----GCUCCGCGUC------------UACCGG--CGGu -5'
25517 3' -60.6 NC_005337.1 + 8717 0.67 0.598107
Target:  5'- gGGGCguccgccccacGUCGuccuuGGCGCGGAUGucGgCGCCGu -3'
miRNA:   3'- -CCCG-----------UAGCu----CCGCGUCUAC--CgGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 9414 0.72 0.345862
Target:  5'- gGGGaUGUUGAGcuCGCGGGUGGCgGCCAu -3'
miRNA:   3'- -CCC-GUAGCUCc-GCGUCUACCGgCGGU- -5'
25517 3' -60.6 NC_005337.1 + 11063 0.73 0.282495
Target:  5'- -aGCAUcgCGAGGcCGCAGAUcGGUCGCCGc -3'
miRNA:   3'- ccCGUA--GCUCC-GCGUCUA-CCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 11315 0.69 0.463139
Target:  5'- cGGGCGUU--GGCGCAGA-GGuCCGUCc -3'
miRNA:   3'- -CCCGUAGcuCCGCGUCUaCC-GGCGGu -5'
25517 3' -60.6 NC_005337.1 + 11524 0.74 0.263518
Target:  5'- cGGGCA-----GCGCAgGGUGGCCGCCAg -3'
miRNA:   3'- -CCCGUagcucCGCGU-CUACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 12102 0.74 0.245589
Target:  5'- cGGGCAcgcuUCGGGGuUGUAGAUGGCgGCg- -3'
miRNA:   3'- -CCCGU----AGCUCC-GCGUCUACCGgCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.