miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25517 3' -60.6 NC_005337.1 + 133498 0.68 0.538762
Target:  5'- -cGuCGUCGgcGGcGCGCAGcacAUGGCCGCCGu -3'
miRNA:   3'- ccC-GUAGC--UC-CGCGUC---UACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 133498 0.68 0.538762
Target:  5'- -cGuCGUCGgcGGcGCGCAGcacAUGGCCGCCGu -3'
miRNA:   3'- ccC-GUAGC--UC-CGCGUC---UACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 133068 0.74 0.25145
Target:  5'- -cGCGUaCGcGGCGCcGGUGGCCGCCu -3'
miRNA:   3'- ccCGUA-GCuCCGCGuCUACCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 132813 0.68 0.529049
Target:  5'- aGGCAgugCGuGGCGUAcGUGGUCGCgCAc -3'
miRNA:   3'- cCCGUa--GCuCCGCGUcUACCGGCG-GU- -5'
25517 3' -60.6 NC_005337.1 + 132369 0.67 0.588118
Target:  5'- aGGCGacugCGGGGUuccCGGA-GGCCGCCGa -3'
miRNA:   3'- cCCGUa---GCUCCGc--GUCUaCCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 131761 0.66 0.658295
Target:  5'- cGGGCcucCGAGGUGCGGca-GCUGCUg -3'
miRNA:   3'- -CCCGua-GCUCCGCGUCuacCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 131167 0.67 0.598107
Target:  5'- cGGCcgcgGUCGcGGuCGCGGAgucgcUGGCCGUCGc -3'
miRNA:   3'- cCCG----UAGCuCC-GCGUCU-----ACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 130724 0.66 0.698116
Target:  5'- uGGaGCucGUCGA-GCGCucGUGGCCGCUg -3'
miRNA:   3'- -CC-CG--UAGCUcCGCGucUACCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 128495 0.67 0.598107
Target:  5'- cGGGCGUgCGucGCGUAcGUGGUCGCgCGg -3'
miRNA:   3'- -CCCGUA-GCucCGCGUcUACCGGCG-GU- -5'
25517 3' -60.6 NC_005337.1 + 127682 0.76 0.188372
Target:  5'- uGGGCGcCGAccuGGCGCcGGUGGCCGCg- -3'
miRNA:   3'- -CCCGUaGCU---CCGCGuCUACCGGCGgu -5'
25517 3' -60.6 NC_005337.1 + 125500 0.75 0.234207
Target:  5'- cGGCAUCGAGGUGgAGGUcgugcGGCUGCUc -3'
miRNA:   3'- cCCGUAGCUCCGCgUCUA-----CCGGCGGu -5'
25517 3' -60.6 NC_005337.1 + 124838 1.1 0.000796
Target:  5'- cGGGCAUCGAGGCGCAGAUGGCCGCCAc -3'
miRNA:   3'- -CCCGUAGCUCCGCGUCUACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 124781 0.71 0.361259
Target:  5'- cGGcCAUCGAGcucugcGCGCAGAUGGgCCGgCGg -3'
miRNA:   3'- cCC-GUAGCUC------CGCGUCUACC-GGCgGU- -5'
25517 3' -60.6 NC_005337.1 + 124293 0.67 0.627184
Target:  5'- aGGuaAUCGAGGaagaGCuagccgaGGA-GGCCGCCGu -3'
miRNA:   3'- -CCcgUAGCUCCg---CG-------UCUaCCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 119564 0.76 0.188372
Target:  5'- uGGGCGUCGuGGagaGCAGGuacccgcaccUGGUCGCCGa -3'
miRNA:   3'- -CCCGUAGCuCCg--CGUCU----------ACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 117572 0.67 0.588118
Target:  5'- -cGCGUCacccGGCaGCGGA-GGCCGCCGu -3'
miRNA:   3'- ccCGUAGcu--CCG-CGUCUaCCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 115089 0.69 0.480626
Target:  5'- uGGGCAUCGuGGagucCGGAcacccggUGGCCGUCGc -3'
miRNA:   3'- -CCCGUAGCuCCgc--GUCU-------ACCGGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 114553 0.67 0.598107
Target:  5'- aGGCcaucGUgGAGGCGCggccgcAGAUGG-CGCCGg -3'
miRNA:   3'- cCCG----UAgCUCCGCG------UCUACCgGCGGU- -5'
25517 3' -60.6 NC_005337.1 + 111083 0.71 0.377126
Target:  5'- cGGGCGU-GAGGUGCGccaGGCCGuCCAg -3'
miRNA:   3'- -CCCGUAgCUCCGCGUcuaCCGGC-GGU- -5'
25517 3' -60.6 NC_005337.1 + 108621 0.66 0.658295
Target:  5'- cGGCGcCGAGGUGgAGAUcgacgcGGCCGUg- -3'
miRNA:   3'- cCCGUaGCUCCGCgUCUA------CCGGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.