miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25517 5' -55.1 NC_005337.1 + 29072 0.79 0.281548
Target:  5'- gCUCAGCggCCCCCAGGCCgCgGACCc -3'
miRNA:   3'- -GAGUUGuaGGGGGUCUGGaGgUUGGa -5'
25517 5' -55.1 NC_005337.1 + 85426 0.68 0.844341
Target:  5'- -gCAGCAUCUCCCGGuacuCCUUgAGCUUc -3'
miRNA:   3'- gaGUUGUAGGGGGUCu---GGAGgUUGGA- -5'
25517 5' -55.1 NC_005337.1 + 121546 0.67 0.852438
Target:  5'- --gGACAUCCUCCGGcACCUCCucgAGCg- -3'
miRNA:   3'- gagUUGUAGGGGGUC-UGGAGG---UUGga -5'
25517 5' -55.1 NC_005337.1 + 29496 0.66 0.889699
Target:  5'- uUCAGCcggaaGUCCUCCAGGagcuUCUCCAGCa- -3'
miRNA:   3'- gAGUUG-----UAGGGGGUCU----GGAGGUUGga -5'
25517 5' -55.1 NC_005337.1 + 123935 0.66 0.889699
Target:  5'- -aCGACGUUCCCCAcGCC-CCGcgaGCCg -3'
miRNA:   3'- gaGUUGUAGGGGGUcUGGaGGU---UGGa -5'
25517 5' -55.1 NC_005337.1 + 112739 0.66 0.896467
Target:  5'- uUCAACGUCgugaaCCCCuccGGCUuucgUCCGGCCUg -3'
miRNA:   3'- gAGUUGUAG-----GGGGu--CUGG----AGGUUGGA- -5'
25517 5' -55.1 NC_005337.1 + 102249 0.66 0.909282
Target:  5'- uUCGugAUCUCCUccgcgaAGACCUUCAucACCg -3'
miRNA:   3'- gAGUugUAGGGGG------UCUGGAGGU--UGGa -5'
25517 5' -55.1 NC_005337.1 + 133267 0.66 0.915325
Target:  5'- uUCGACggCCUCCAGGcgacgcccgcCCUCCGccgcGCCg -3'
miRNA:   3'- gAGUUGuaGGGGGUCU----------GGAGGU----UGGa -5'
25517 5' -55.1 NC_005337.1 + 59164 0.66 0.921121
Target:  5'- -aCGACGuuccUCCCCCAGGCCgugcgUCGgggcACCg -3'
miRNA:   3'- gaGUUGU----AGGGGGUCUGGa----GGU----UGGa -5'
25517 5' -55.1 NC_005337.1 + 133216 0.68 0.827554
Target:  5'- -gCAGuCcgCCCCCGccGGCCUCCcGCCg -3'
miRNA:   3'- gaGUU-GuaGGGGGU--CUGGAGGuUGGa -5'
25517 5' -55.1 NC_005337.1 + 46935 0.68 0.818881
Target:  5'- -aCAACGUCaUCCGGcUCUCCAGCCa -3'
miRNA:   3'- gaGUUGUAGgGGGUCuGGAGGUUGGa -5'
25517 5' -55.1 NC_005337.1 + 93486 0.78 0.316786
Target:  5'- -cCAugGUCCCgUGGACCUCCAGCUUg -3'
miRNA:   3'- gaGUugUAGGGgGUCUGGAGGUUGGA- -5'
25517 5' -55.1 NC_005337.1 + 36986 0.73 0.528406
Target:  5'- gCUCAugAUCUCCgCGG-UCUCCAGCCg -3'
miRNA:   3'- -GAGUugUAGGGG-GUCuGGAGGUUGGa -5'
25517 5' -55.1 NC_005337.1 + 10266 0.73 0.538478
Target:  5'- aUCAGCAgCUCCCGGACCaCCAuCCUg -3'
miRNA:   3'- gAGUUGUaGGGGGUCUGGaGGUuGGA- -5'
25517 5' -55.1 NC_005337.1 + 23700 0.71 0.666627
Target:  5'- uUCAACAUCCUCUucugguucaagggcgAGACCUUCGACa- -3'
miRNA:   3'- gAGUUGUAGGGGG---------------UCUGGAGGUUGga -5'
25517 5' -55.1 NC_005337.1 + 62096 0.7 0.703698
Target:  5'- uUCAgguACAccuUCCCCguGGCCUCCAggaacACCUu -3'
miRNA:   3'- gAGU---UGU---AGGGGguCUGGAGGU-----UGGA- -5'
25517 5' -55.1 NC_005337.1 + 60855 0.7 0.713871
Target:  5'- gCUCAugAUCUCCUGGAaCUCCGACg- -3'
miRNA:   3'- -GAGUugUAGGGGGUCUgGAGGUUGga -5'
25517 5' -55.1 NC_005337.1 + 28685 0.69 0.763458
Target:  5'- cCUCGGCGaagUCCCGGACCUCCuucuCCa -3'
miRNA:   3'- -GAGUUGUag-GGGGUCUGGAGGuu--GGa -5'
25517 5' -55.1 NC_005337.1 + 59546 0.69 0.781576
Target:  5'- gUCAGgAaguagauUCCCCCGGGCCaguacuucgCCAGCCa -3'
miRNA:   3'- gAGUUgU-------AGGGGGUCUGGa--------GGUUGGa -5'
25517 5' -55.1 NC_005337.1 + 53828 0.66 0.915325
Target:  5'- -aCAGCGUCuCCUCGGACCggCUGGCgCUg -3'
miRNA:   3'- gaGUUGUAG-GGGGUCUGGa-GGUUG-GA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.