Results 1 - 20 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 1773 | 0.67 | 0.868007 |
Target: 5'- -gCGGCAUCCCgccggccgCCAGucCCUCCuGCCg -3' miRNA: 3'- gaGUUGUAGGG--------GGUCu-GGAGGuUGGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 10266 | 0.73 | 0.538478 |
Target: 5'- aUCAGCAgCUCCCGGACCaCCAuCCUg -3' miRNA: 3'- gAGUUGUaGGGGGUCUGGaGGUuGGA- -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 23700 | 0.71 | 0.666627 |
Target: 5'- uUCAACAUCCUCUucugguucaagggcgAGACCUUCGACa- -3' miRNA: 3'- gAGUUGUAGGGGG---------------UCUGGAGGUUGga -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 28685 | 0.69 | 0.763458 |
Target: 5'- cCUCGGCGaagUCCCGGACCUCCuucuCCa -3' miRNA: 3'- -GAGUUGUag-GGGGUCUGGAGGuu--GGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 29072 | 0.79 | 0.281548 |
Target: 5'- gCUCAGCggCCCCCAGGCCgCgGACCc -3' miRNA: 3'- -GAGUUGuaGGGGGUCUGGaGgUUGGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 29496 | 0.66 | 0.889699 |
Target: 5'- uUCAGCcggaaGUCCUCCAGGagcuUCUCCAGCa- -3' miRNA: 3'- gAGUUG-----UAGGGGGUCU----GGAGGUUGga -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 32753 | 0.66 | 0.909282 |
Target: 5'- gUC-ACGUCCa-CGG-CCUCCAGCCg -3' miRNA: 3'- gAGuUGUAGGggGUCuGGAGGUUGGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 33752 | 0.68 | 0.844341 |
Target: 5'- --aGACAUCCCCC--ACCUCCGcGCUg -3' miRNA: 3'- gagUUGUAGGGGGucUGGAGGU-UGGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 36986 | 0.73 | 0.528406 |
Target: 5'- gCUCAugAUCUCCgCGG-UCUCCAGCCg -3' miRNA: 3'- -GAGUugUAGGGG-GUCuGGAGGUUGGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 40911 | 0.68 | 0.836043 |
Target: 5'- gUCAgGCAUugCCCCCAgucguccucGACCUCCucGACCUc -3' miRNA: 3'- gAGU-UGUA--GGGGGU---------CUGGAGG--UUGGA- -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 45975 | 0.67 | 0.882697 |
Target: 5'- --uGACGUCCCCgAGcuugauguccGCCUCC-ACCg -3' miRNA: 3'- gagUUGUAGGGGgUC----------UGGAGGuUGGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 46935 | 0.68 | 0.818881 |
Target: 5'- -aCAACGUCaUCCGGcUCUCCAGCCa -3' miRNA: 3'- gaGUUGUAGgGGGUCuGGAGGUUGGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 52077 | 0.71 | 0.683175 |
Target: 5'- gCUguACcUCCCCagCGGAuCCUCCAGCCUc -3' miRNA: 3'- -GAguUGuAGGGG--GUCU-GGAGGUUGGA- -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 53746 | 0.66 | 0.913538 |
Target: 5'- gUgGACAUCuccgcgCCCCGGGCCUcggcgugcccgcccCCGGCCg -3' miRNA: 3'- gAgUUGUAG------GGGGUCUGGA--------------GGUUGGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 53828 | 0.66 | 0.915325 |
Target: 5'- -aCAGCGUCuCCUCGGACCggCUGGCgCUg -3' miRNA: 3'- gaGUUGUAG-GGGGUCUGGa-GGUUG-GA- -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 56603 | 0.66 | 0.909282 |
Target: 5'- gUCGACcgCUUCCuGGCCUucgCCGGCCg -3' miRNA: 3'- gAGUUGuaGGGGGuCUGGA---GGUUGGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 59164 | 0.66 | 0.921121 |
Target: 5'- -aCGACGuuccUCCCCCAGGCCgugcgUCGgggcACCg -3' miRNA: 3'- gaGUUGU----AGGGGGUCUGGa----GGU----UGGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 59546 | 0.69 | 0.781576 |
Target: 5'- gUCAGgAaguagauUCCCCCGGGCCaguacuucgCCAGCCa -3' miRNA: 3'- gAGUUgU-------AGGGGGUCUGGa--------GGUUGGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 60855 | 0.7 | 0.713871 |
Target: 5'- gCUCAugAUCUCCUGGAaCUCCGACg- -3' miRNA: 3'- -GAGUugUAGGGGGUCUgGAGGUUGga -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 62096 | 0.7 | 0.703698 |
Target: 5'- uUCAgguACAccuUCCCCguGGCCUCCAggaacACCUu -3' miRNA: 3'- gAGU---UGU---AGGGGguCUGGAGGU-----UGGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home