Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 133267 | 0.66 | 0.915325 |
Target: 5'- uUCGACggCCUCCAGGcgacgcccgcCCUCCGccgcGCCg -3' miRNA: 3'- gAGUUGuaGGGGGUCU----------GGAGGU----UGGa -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 133267 | 0.66 | 0.915325 |
Target: 5'- uUCGACggCCUCCAGGcgacgcccgcCCUCCGccgcGCCg -3' miRNA: 3'- gAGUUGuaGGGGGUCU----------GGAGGU----UGGa -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 133216 | 0.68 | 0.827554 |
Target: 5'- -gCAGuCcgCCCCCGccGGCCUCCcGCCg -3' miRNA: 3'- gaGUU-GuaGGGGGU--CUGGAGGuUGGa -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 133216 | 0.68 | 0.827554 |
Target: 5'- -gCAGuCcgCCCCCGccGGCCUCCcGCCg -3' miRNA: 3'- gaGUU-GuaGGGGGU--CUGGAGGuUGGa -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 130435 | 0.69 | 0.763458 |
Target: 5'- aUCGACAUCCUCCuGucgaGCCgguucaugUCCAGCCUc -3' miRNA: 3'- gAGUUGUAGGGGGuC----UGG--------AGGUUGGA- -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 124872 | 1.07 | 0.003871 |
Target: 5'- gCUCAACAUCCCCCAGACCUCCAACCUc -3' miRNA: 3'- -GAGUUGUAGGGGGUCUGGAGGUUGGA- -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 124679 | 0.66 | 0.896467 |
Target: 5'- gUCAGgAUCCCCguGcUCUUCGACCc -3' miRNA: 3'- gAGUUgUAGGGGguCuGGAGGUUGGa -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 123935 | 0.66 | 0.889699 |
Target: 5'- -aCGACGUUCCCCAcGCC-CCGcgaGCCg -3' miRNA: 3'- gaGUUGUAGGGGGUcUGGaGGU---UGGa -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 123548 | 0.66 | 0.89713 |
Target: 5'- cCUCGACAUCCUCCGGcGCCggucggaggacgagcCCGAgCUc -3' miRNA: 3'- -GAGUUGUAGGGGGUC-UGGa--------------GGUUgGA- -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 121546 | 0.67 | 0.852438 |
Target: 5'- --gGACAUCCUCCGGcACCUCCucgAGCg- -3' miRNA: 3'- gagUUGUAGGGGGUC-UGGAGG---UUGga -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 112739 | 0.66 | 0.896467 |
Target: 5'- uUCAACGUCgugaaCCCCuccGGCUuucgUCCGGCCUg -3' miRNA: 3'- gAGUUGUAG-----GGGGu--CUGG----AGGUUGGA- -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 102249 | 0.66 | 0.909282 |
Target: 5'- uUCGugAUCUCCUccgcgaAGACCUUCAucACCg -3' miRNA: 3'- gAGUugUAGGGGG------UCUGGAGGU--UGGa -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 100557 | 0.68 | 0.827554 |
Target: 5'- uUCAugcGCAgCCCUCAGAUUUCCAuggGCCUc -3' miRNA: 3'- gAGU---UGUaGGGGGUCUGGAGGU---UGGA- -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 93486 | 0.78 | 0.316786 |
Target: 5'- -cCAugGUCCCgUGGACCUCCAGCUUg -3' miRNA: 3'- gaGUugUAGGGgGUCUGGAGGUUGGA- -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 91698 | 0.68 | 0.801015 |
Target: 5'- cCUUcACGgagagCCCCGcGGCCUCCAGCCg -3' miRNA: 3'- -GAGuUGUag---GGGGU-CUGGAGGUUGGa -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 90595 | 0.73 | 0.55881 |
Target: 5'- gUCGGCGUCCgCCCGGGCCacgauuUCCcgguGCCUg -3' miRNA: 3'- gAGUUGUAGG-GGGUCUGG------AGGu---UGGA- -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 89835 | 0.71 | 0.672843 |
Target: 5'- gCUCGACGUCCUCCGGcggcggcucccgGCgCUCCGGCa- -3' miRNA: 3'- -GAGUUGUAGGGGGUC------------UG-GAGGUUGga -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 89085 | 0.67 | 0.852438 |
Target: 5'- -gCGACAgCgCCCCGGGCacggCCAGCCg -3' miRNA: 3'- gaGUUGUaG-GGGGUCUGga--GGUUGGa -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 87947 | 0.68 | 0.801015 |
Target: 5'- -gCGGCAg--CCCGGACCUCCugcGCCUg -3' miRNA: 3'- gaGUUGUaggGGGUCUGGAGGu--UGGA- -5' |
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25517 | 5' | -55.1 | NC_005337.1 | + | 85426 | 0.68 | 0.844341 |
Target: 5'- -gCAGCAUCUCCCGGuacuCCUUgAGCUUc -3' miRNA: 3'- gaGUUGUAGGGGGUCu---GGAGgUUGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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