miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25517 5' -55.1 NC_005337.1 + 72057 0.67 0.875464
Target:  5'- aUCGGCAUCCCCguGuCCcgCCGgaaacugaACCUg -3'
miRNA:   3'- gAGUUGUAGGGGguCuGGa-GGU--------UGGA- -5'
25517 5' -55.1 NC_005337.1 + 85426 0.68 0.844341
Target:  5'- -gCAGCAUCUCCCGGuacuCCUUgAGCUUc -3'
miRNA:   3'- gaGUUGUAGGGGGUCu---GGAGgUUGGA- -5'
25517 5' -55.1 NC_005337.1 + 87947 0.68 0.801015
Target:  5'- -gCGGCAg--CCCGGACCUCCugcGCCUg -3'
miRNA:   3'- gaGUUGUaggGGGUCUGGAGGu--UGGA- -5'
25517 5' -55.1 NC_005337.1 + 89085 0.67 0.852438
Target:  5'- -gCGACAgCgCCCCGGGCacggCCAGCCg -3'
miRNA:   3'- gaGUUGUaG-GGGGUCUGga--GGUUGGa -5'
25517 5' -55.1 NC_005337.1 + 89835 0.71 0.672843
Target:  5'- gCUCGACGUCCUCCGGcggcggcucccgGCgCUCCGGCa- -3'
miRNA:   3'- -GAGUUGUAGGGGGUC------------UG-GAGGUUGga -5'
25517 5' -55.1 NC_005337.1 + 90595 0.73 0.55881
Target:  5'- gUCGGCGUCCgCCCGGGCCacgauuUCCcgguGCCUg -3'
miRNA:   3'- gAGUUGUAGG-GGGUCUGG------AGGu---UGGA- -5'
25517 5' -55.1 NC_005337.1 + 91698 0.68 0.801015
Target:  5'- cCUUcACGgagagCCCCGcGGCCUCCAGCCg -3'
miRNA:   3'- -GAGuUGUag---GGGGU-CUGGAGGUUGGa -5'
25517 5' -55.1 NC_005337.1 + 93486 0.78 0.316786
Target:  5'- -cCAugGUCCCgUGGACCUCCAGCUUg -3'
miRNA:   3'- gaGUugUAGGGgGUCUGGAGGUUGGA- -5'
25517 5' -55.1 NC_005337.1 + 100557 0.68 0.827554
Target:  5'- uUCAugcGCAgCCCUCAGAUUUCCAuggGCCUc -3'
miRNA:   3'- gAGU---UGUaGGGGGUCUGGAGGU---UGGA- -5'
25517 5' -55.1 NC_005337.1 + 102249 0.66 0.909282
Target:  5'- uUCGugAUCUCCUccgcgaAGACCUUCAucACCg -3'
miRNA:   3'- gAGUugUAGGGGG------UCUGGAGGU--UGGa -5'
25517 5' -55.1 NC_005337.1 + 112739 0.66 0.896467
Target:  5'- uUCAACGUCgugaaCCCCuccGGCUuucgUCCGGCCUg -3'
miRNA:   3'- gAGUUGUAG-----GGGGu--CUGG----AGGUUGGA- -5'
25517 5' -55.1 NC_005337.1 + 121546 0.67 0.852438
Target:  5'- --gGACAUCCUCCGGcACCUCCucgAGCg- -3'
miRNA:   3'- gagUUGUAGGGGGUC-UGGAGG---UUGga -5'
25517 5' -55.1 NC_005337.1 + 123548 0.66 0.89713
Target:  5'- cCUCGACAUCCUCCGGcGCCggucggaggacgagcCCGAgCUc -3'
miRNA:   3'- -GAGUUGUAGGGGGUC-UGGa--------------GGUUgGA- -5'
25517 5' -55.1 NC_005337.1 + 123935 0.66 0.889699
Target:  5'- -aCGACGUUCCCCAcGCC-CCGcgaGCCg -3'
miRNA:   3'- gaGUUGUAGGGGGUcUGGaGGU---UGGa -5'
25517 5' -55.1 NC_005337.1 + 124679 0.66 0.896467
Target:  5'- gUCAGgAUCCCCguGcUCUUCGACCc -3'
miRNA:   3'- gAGUUgUAGGGGguCuGGAGGUUGGa -5'
25517 5' -55.1 NC_005337.1 + 124872 1.07 0.003871
Target:  5'- gCUCAACAUCCCCCAGACCUCCAACCUc -3'
miRNA:   3'- -GAGUUGUAGGGGGUCUGGAGGUUGGA- -5'
25517 5' -55.1 NC_005337.1 + 130435 0.69 0.763458
Target:  5'- aUCGACAUCCUCCuGucgaGCCgguucaugUCCAGCCUc -3'
miRNA:   3'- gAGUUGUAGGGGGuC----UGG--------AGGUUGGA- -5'
25517 5' -55.1 NC_005337.1 + 133216 0.68 0.827554
Target:  5'- -gCAGuCcgCCCCCGccGGCCUCCcGCCg -3'
miRNA:   3'- gaGUU-GuaGGGGGU--CUGGAGGuUGGa -5'
25517 5' -55.1 NC_005337.1 + 133216 0.68 0.827554
Target:  5'- -gCAGuCcgCCCCCGccGGCCUCCcGCCg -3'
miRNA:   3'- gaGUU-GuaGGGGGU--CUGGAGGuUGGa -5'
25517 5' -55.1 NC_005337.1 + 133267 0.66 0.915325
Target:  5'- uUCGACggCCUCCAGGcgacgcccgcCCUCCGccgcGCCg -3'
miRNA:   3'- gAGUUGuaGGGGGUCU----------GGAGGU----UGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.