Results 21 - 40 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 40911 | 0.68 | 0.836043 |
Target: 5'- gUCAgGCAUugCCCCCAgucguccucGACCUCCucGACCUc -3' miRNA: 3'- gAGU-UGUA--GGGGGU---------CUGGAGG--UUGGA- -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 100557 | 0.68 | 0.827554 |
Target: 5'- uUCAugcGCAgCCCUCAGAUUUCCAuggGCCUc -3' miRNA: 3'- gAGU---UGUaGGGGGUCUGGAGGU---UGGA- -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 133216 | 0.68 | 0.827554 |
Target: 5'- -gCAGuCcgCCCCCGccGGCCUCCcGCCg -3' miRNA: 3'- gaGUU-GuaGGGGGU--CUGGAGGuUGGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 133216 | 0.68 | 0.827554 |
Target: 5'- -gCAGuCcgCCCCCGccGGCCUCCcGCCg -3' miRNA: 3'- gaGUU-GuaGGGGGU--CUGGAGGuUGGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 46935 | 0.68 | 0.818881 |
Target: 5'- -aCAACGUCaUCCGGcUCUCCAGCCa -3' miRNA: 3'- gaGUUGUAGgGGGUCuGGAGGUUGGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 91698 | 0.68 | 0.801015 |
Target: 5'- cCUUcACGgagagCCCCGcGGCCUCCAGCCg -3' miRNA: 3'- -GAGuUGUag---GGGGU-CUGGAGGUUGGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 87947 | 0.68 | 0.801015 |
Target: 5'- -gCGGCAg--CCCGGACCUCCugcGCCUg -3' miRNA: 3'- gaGUUGUaggGGGUCUGGAGGu--UGGA- -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 59546 | 0.69 | 0.781576 |
Target: 5'- gUCAGgAaguagauUCCCCCGGGCCaguacuucgCCAGCCa -3' miRNA: 3'- gAGUUgU-------AGGGGGUCUGGa--------GGUUGGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 130435 | 0.69 | 0.763458 |
Target: 5'- aUCGACAUCCUCCuGucgaGCCgguucaugUCCAGCCUc -3' miRNA: 3'- gAGUUGUAGGGGGuC----UGG--------AGGUUGGA- -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 28685 | 0.69 | 0.763458 |
Target: 5'- cCUCGGCGaagUCCCGGACCUCCuucuCCa -3' miRNA: 3'- -GAGUUGUag-GGGGUCUGGAGGuu--GGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 60855 | 0.7 | 0.713871 |
Target: 5'- gCUCAugAUCUCCUGGAaCUCCGACg- -3' miRNA: 3'- -GAGUugUAGGGGGUCUgGAGGUUGga -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 62096 | 0.7 | 0.703698 |
Target: 5'- uUCAgguACAccuUCCCCguGGCCUCCAggaacACCUu -3' miRNA: 3'- gAGU---UGU---AGGGGguCUGGAGGU-----UGGA- -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 52077 | 0.71 | 0.683175 |
Target: 5'- gCUguACcUCCCCagCGGAuCCUCCAGCCUc -3' miRNA: 3'- -GAguUGuAGGGG--GUCU-GGAGGUUGGA- -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 89835 | 0.71 | 0.672843 |
Target: 5'- gCUCGACGUCCUCCGGcggcggcucccgGCgCUCCGGCa- -3' miRNA: 3'- -GAGUUGUAGGGGGUC------------UG-GAGGUUGga -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 23700 | 0.71 | 0.666627 |
Target: 5'- uUCAACAUCCUCUucugguucaagggcgAGACCUUCGACa- -3' miRNA: 3'- gAGUUGUAGGGGG---------------UCUGGAGGUUGga -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 90595 | 0.73 | 0.55881 |
Target: 5'- gUCGGCGUCCgCCCGGGCCacgauuUCCcgguGCCUg -3' miRNA: 3'- gAGUUGUAGG-GGGUCUGG------AGGu---UGGA- -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 10266 | 0.73 | 0.538478 |
Target: 5'- aUCAGCAgCUCCCGGACCaCCAuCCUg -3' miRNA: 3'- gAGUUGUaGGGGGUCUGGaGGUuGGA- -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 36986 | 0.73 | 0.528406 |
Target: 5'- gCUCAugAUCUCCgCGG-UCUCCAGCCg -3' miRNA: 3'- -GAGUugUAGGGG-GUCuGGAGGUUGGa -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 93486 | 0.78 | 0.316786 |
Target: 5'- -cCAugGUCCCgUGGACCUCCAGCUUg -3' miRNA: 3'- gaGUugUAGGGgGUCUGGAGGUUGGA- -5' |
|||||||
25517 | 5' | -55.1 | NC_005337.1 | + | 29072 | 0.79 | 0.281548 |
Target: 5'- gCUCAGCggCCCCCAGGCCgCgGACCc -3' miRNA: 3'- -GAGUUGuaGGGGGUCUGGaGgUUGGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home