miRNA display CGI


Results 61 - 80 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25518 5' -56.3 NC_005337.1 + 27215 0.67 0.816303
Target:  5'- --cUGGCGcgccgccGCCGCCAGGUCcUCGuCGg -3'
miRNA:   3'- gaaGCUGU-------CGGCGGUCCAGaAGC-GCg -5'
25518 5' -56.3 NC_005337.1 + 38324 0.68 0.808426
Target:  5'- -aUCGACAcGCCggcGCCGGG-CgaguaCGCGCu -3'
miRNA:   3'- gaAGCUGU-CGG---CGGUCCaGaa---GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 12255 0.68 0.808426
Target:  5'- -cUCGAgCAuguccgucGCgGCCGGGUCgcaccccgCGCGCa -3'
miRNA:   3'- gaAGCU-GU--------CGgCGGUCCAGaa------GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 30585 0.68 0.808426
Target:  5'- -gUCGACcuuGuuGCgCAGGUC--CGCGCu -3'
miRNA:   3'- gaAGCUGu--CggCG-GUCCAGaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 123598 0.68 0.798623
Target:  5'- cCUUCGAgGagaacccGCCGCC-GGcCggCGCGCg -3'
miRNA:   3'- -GAAGCUgU-------CGGCGGuCCaGaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 25192 0.68 0.781267
Target:  5'- -cUCGGCcGCgGCCAuGUUcgUCGCGCu -3'
miRNA:   3'- gaAGCUGuCGgCGGUcCAGa-AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 33411 0.68 0.781267
Target:  5'- --cUGGCGGCCGCCGuGGaUggUGCGCu -3'
miRNA:   3'- gaaGCUGUCGGCGGU-CCaGaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 118137 0.68 0.781267
Target:  5'- aCUUCGACGugugcgguGCCGCCauggAGGUUgacgGCGCc -3'
miRNA:   3'- -GAAGCUGU--------CGGCGG----UCCAGaag-CGCG- -5'
25518 5' -56.3 NC_005337.1 + 117156 0.68 0.781267
Target:  5'- --aCGACGGCggcgaguucUGCCGGG-CgcacUCGCGCg -3'
miRNA:   3'- gaaGCUGUCG---------GCGGUCCaGa---AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 91100 0.68 0.771934
Target:  5'- --gCGAuCAGCgGCgAGGUCcggucggCGCGCa -3'
miRNA:   3'- gaaGCU-GUCGgCGgUCCAGaa-----GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 64298 0.68 0.771934
Target:  5'- --aCGGCGGUCGCgucCGGcGUCUUgCGCGUg -3'
miRNA:   3'- gaaGCUGUCGGCG---GUC-CAGAA-GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 45485 0.68 0.762475
Target:  5'- -cUCuGCAGCCGCUucuGGUa--CGCGCg -3'
miRNA:   3'- gaAGcUGUCGGCGGu--CCAgaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 6587 0.68 0.762475
Target:  5'- -gUCG-CGGCCaccggcGCCAGGUCg--GCGCc -3'
miRNA:   3'- gaAGCuGUCGG------CGGUCCAGaagCGCG- -5'
25518 5' -56.3 NC_005337.1 + 98542 0.68 0.762475
Target:  5'- --cCGACGGCCgcgugcuugccaGCCGGGaCUUCGUcacGCg -3'
miRNA:   3'- gaaGCUGUCGG------------CGGUCCaGAAGCG---CG- -5'
25518 5' -56.3 NC_005337.1 + 20198 0.69 0.7529
Target:  5'- -aUCG-CGGCCGUgAGGUagaaCGCGCc -3'
miRNA:   3'- gaAGCuGUCGGCGgUCCAgaa-GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 33025 0.69 0.7529
Target:  5'- --cCGcCAGCgG-CAGGUCaUCGCGCu -3'
miRNA:   3'- gaaGCuGUCGgCgGUCCAGaAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 62748 0.69 0.733439
Target:  5'- aCUUCG-CGGCCGUguuCGGG---UCGCGCa -3'
miRNA:   3'- -GAAGCuGUCGGCG---GUCCagaAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 84379 0.69 0.713625
Target:  5'- -aUCGGUGGUCGCCGGGU--UCGCGg -3'
miRNA:   3'- gaAGCUGUCGGCGGUCCAgaAGCGCg -5'
25518 5' -56.3 NC_005337.1 + 9116 0.69 0.711627
Target:  5'- -gUCGGCGGUCuCCAGGUaccgguacagCGCGCu -3'
miRNA:   3'- gaAGCUGUCGGcGGUCCAgaa-------GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 59277 0.69 0.709626
Target:  5'- --gCGGCGGCCGCCucguguacguGGUCgacccggccgcuaUCGCGUa -3'
miRNA:   3'- gaaGCUGUCGGCGGu---------CCAGa------------AGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.