miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25518 5' -56.3 NC_005337.1 + 52098 0.67 0.842356
Target:  5'- --cCGGCGGCCGCgugCAGGUg--CGCGa -3'
miRNA:   3'- gaaGCUGUCGGCG---GUCCAgaaGCGCg -5'
25518 5' -56.3 NC_005337.1 + 109517 0.67 0.842356
Target:  5'- --aUGaACGG-UGCCAGGUCcUCGUGCu -3'
miRNA:   3'- gaaGC-UGUCgGCGGUCCAGaAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 2479 0.67 0.842356
Target:  5'- -cUCGGCGGCUauguUCGGGUacgCGCGCa -3'
miRNA:   3'- gaAGCUGUCGGc---GGUCCAgaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 110371 0.67 0.842356
Target:  5'- --gCGGCAGCCGUCccacgggcgugGGGUUgcugaugCGCGUg -3'
miRNA:   3'- gaaGCUGUCGGCGG-----------UCCAGaa-----GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 8287 0.67 0.834143
Target:  5'- --gCGACGuGCaGCgGGGUCUgcagcCGCGCg -3'
miRNA:   3'- gaaGCUGU-CGgCGgUCCAGAa----GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 20111 0.67 0.834143
Target:  5'- -gUgGACAGCUGUCgcauguGGGcCUUgGCGCg -3'
miRNA:   3'- gaAgCUGUCGGCGG------UCCaGAAgCGCG- -5'
25518 5' -56.3 NC_005337.1 + 74979 0.67 0.834143
Target:  5'- --gCGAUAGCgGCCGGGUCgacCaCGUa -3'
miRNA:   3'- gaaGCUGUCGgCGGUCCAGaa-GcGCG- -5'
25518 5' -56.3 NC_005337.1 + 28998 0.67 0.825745
Target:  5'- --gCGGCGGCCGCCcaGGGUCagccaCG-GCg -3'
miRNA:   3'- gaaGCUGUCGGCGG--UCCAGaa---GCgCG- -5'
25518 5' -56.3 NC_005337.1 + 73439 0.67 0.825745
Target:  5'- ---aGAUcGUgCGCCAGuUCUUCGCGCg -3'
miRNA:   3'- gaagCUGuCG-GCGGUCcAGAAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 13909 0.67 0.825745
Target:  5'- --cCGGCAgGCgCGCCGGGUCccgaaggaCGCGUu -3'
miRNA:   3'- gaaGCUGU-CG-GCGGUCCAGaa------GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 3418 0.67 0.825745
Target:  5'- -gUUGAgGGCCGUCGGGUCgcaGCcgaGCu -3'
miRNA:   3'- gaAGCUgUCGGCGGUCCAGaagCG---CG- -5'
25518 5' -56.3 NC_005337.1 + 98938 0.67 0.825745
Target:  5'- aCUUCGGCGccacGCaCGCCuGGGUCcgCgGCGCc -3'
miRNA:   3'- -GAAGCUGU----CG-GCGG-UCCAGaaG-CGCG- -5'
25518 5' -56.3 NC_005337.1 + 59580 0.67 0.825745
Target:  5'- --gCGGCGGauGCC-GGUCUccuccucgaccUCGCGCg -3'
miRNA:   3'- gaaGCUGUCggCGGuCCAGA-----------AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 47308 0.67 0.825745
Target:  5'- --cCGAC-GCgCGCgAGGUCUUCGUcaacaGCa -3'
miRNA:   3'- gaaGCUGuCG-GCGgUCCAGAAGCG-----CG- -5'
25518 5' -56.3 NC_005337.1 + 110328 0.67 0.825745
Target:  5'- gUUCGGCc-CgGCCGGG-CggcgUCGCGCg -3'
miRNA:   3'- gAAGCUGucGgCGGUCCaGa---AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 82795 0.67 0.825745
Target:  5'- --aCGGgAGCCGCCuuaucaGUCgccaUCGCGCc -3'
miRNA:   3'- gaaGCUgUCGGCGGuc----CAGa---AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 105087 0.67 0.825745
Target:  5'- cCUUCGGCAcgggcGCCGCCGcGUCUcCGgaGCu -3'
miRNA:   3'- -GAAGCUGU-----CGGCGGUcCAGAaGCg-CG- -5'
25518 5' -56.3 NC_005337.1 + 91213 0.67 0.81717
Target:  5'- ---gGGCGcGCCGCCGguGGUCagCGCGUc -3'
miRNA:   3'- gaagCUGU-CGGCGGU--CCAGaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 116998 0.67 0.81717
Target:  5'- -cUCGACAGCuucaacgugCGCCAGGccacgCUcCGgGCg -3'
miRNA:   3'- gaAGCUGUCG---------GCGGUCCa----GAaGCgCG- -5'
25518 5' -56.3 NC_005337.1 + 130740 0.67 0.81717
Target:  5'- -cUCG-UGGCCGCUGGGUCcgacgUGUGCa -3'
miRNA:   3'- gaAGCuGUCGGCGGUCCAGaa---GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.