miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25518 5' -56.3 NC_005337.1 + 23863 0.66 0.873226
Target:  5'- cCUUCGACcGCgCGUUcucgGGGUUcaCGCGCa -3'
miRNA:   3'- -GAAGCUGuCG-GCGG----UCCAGaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 16700 0.66 0.873226
Target:  5'- --aCGGCGGCCuccgcuGCCGGGUga-CGCGUc -3'
miRNA:   3'- gaaGCUGUCGG------CGGUCCAgaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 6631 0.66 0.873226
Target:  5'- --cCGGCAcGCCGCaGGGUUgaagaccgcCGCGCg -3'
miRNA:   3'- gaaGCUGU-CGGCGgUCCAGaa-------GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 51767 0.66 0.871026
Target:  5'- -cUgGACGGCCGCCccguggcguuccccGGGUgcgacggcgUUUUGCGCc -3'
miRNA:   3'- gaAgCUGUCGGCGG--------------UCCA---------GAAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 49739 0.66 0.865819
Target:  5'- uUUCcACAGCCGCCGcGUCcUCGgGg -3'
miRNA:   3'- gAAGcUGUCGGCGGUcCAGaAGCgCg -5'
25518 5' -56.3 NC_005337.1 + 23077 0.66 0.865819
Target:  5'- --gCGGCGGCCguGCCcGGcaUCgugCGCGCg -3'
miRNA:   3'- gaaGCUGUCGG--CGGuCC--AGaa-GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 79680 0.66 0.865067
Target:  5'- gUUCGGCgAGgUGCCcguggagAGGUCguucagcUCGCGCg -3'
miRNA:   3'- gAAGCUG-UCgGCGG-------UCCAGa------AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 59574 0.66 0.861273
Target:  5'- aCUUCGcCAGCCacgcggccagcauggGCCacAGGccCUUCGCGUu -3'
miRNA:   3'- -GAAGCuGUCGG---------------CGG--UCCa-GAAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 113599 0.66 0.858201
Target:  5'- -gUCGACGGgugcCCGCCccucuGGUC--CGCGCc -3'
miRNA:   3'- gaAGCUGUC----GGCGGu----CCAGaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 7830 0.66 0.858201
Target:  5'- --gCGACAGCgCGCgGuGGUacaCGCGCa -3'
miRNA:   3'- gaaGCUGUCG-GCGgU-CCAgaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 95918 0.66 0.858201
Target:  5'- --aCGGCGGCCGCgCGcGcCU-CGCGCu -3'
miRNA:   3'- gaaGCUGUCGGCG-GUcCaGAaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 43342 0.66 0.858201
Target:  5'- --cCGACgcgcuGGCCGCCGGGaagacgccgCUgCGCGUg -3'
miRNA:   3'- gaaGCUG-----UCGGCGGUCCa--------GAaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 27523 0.66 0.857428
Target:  5'- aUUCGuuGGuuGCCAGGUUuaagucuUUgGUGCa -3'
miRNA:   3'- gAAGCugUCggCGGUCCAG-------AAgCGCG- -5'
25518 5' -56.3 NC_005337.1 + 83371 0.67 0.850378
Target:  5'- ---gGAcCGGCCGCUGGG-CgcgCGCGCc -3'
miRNA:   3'- gaagCU-GUCGGCGGUCCaGaa-GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 62538 0.67 0.850378
Target:  5'- --cCGACAGgcugaCCGUCGcGUCgUCGCGCa -3'
miRNA:   3'- gaaGCUGUC-----GGCGGUcCAGaAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 16660 0.67 0.850378
Target:  5'- --gCGGCGGCCGgUcgagacgaGGGUCgacagcaucUCGCGCa -3'
miRNA:   3'- gaaGCUGUCGGCgG--------UCCAGa--------AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 131221 0.67 0.850378
Target:  5'- --gCGcUAGCCGCCGGuGUgUggcguacguggUCGCGCa -3'
miRNA:   3'- gaaGCuGUCGGCGGUC-CAgA-----------AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 37304 0.67 0.850378
Target:  5'- --cCGccCGGCCGCgAGGagCUggUCGCGCg -3'
miRNA:   3'- gaaGCu-GUCGGCGgUCCa-GA--AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 41789 0.67 0.850378
Target:  5'- uCUUCGGCA-UCaCCAGGUCggccUCGgGCa -3'
miRNA:   3'- -GAAGCUGUcGGcGGUCCAGa---AGCgCG- -5'
25518 5' -56.3 NC_005337.1 + 118503 0.67 0.847992
Target:  5'- --gCGACuAGCCGCCucguccgcaauuucAGGUC--CGUGCa -3'
miRNA:   3'- gaaGCUG-UCGGCGG--------------UCCAGaaGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.