miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25518 5' -56.3 NC_005337.1 + 64187 0.66 0.880416
Target:  5'- gUUCGugGGCaaggaCAGGg--UCGCGCa -3'
miRNA:   3'- gAAGCugUCGgcg--GUCCagaAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 46022 0.66 0.880416
Target:  5'- --cCGcCGGCgCGCCGGcacgcacgacGUCUUCGCaGCa -3'
miRNA:   3'- gaaGCuGUCG-GCGGUC----------CAGAAGCG-CG- -5'
25518 5' -56.3 NC_005337.1 + 23863 0.66 0.873226
Target:  5'- cCUUCGACcGCgCGUUcucgGGGUUcaCGCGCa -3'
miRNA:   3'- -GAAGCUGuCG-GCGG----UCCAGaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 51767 0.66 0.871026
Target:  5'- -cUgGACGGCCGCCccguggcguuccccGGGUgcgacggcgUUUUGCGCc -3'
miRNA:   3'- gaAgCUGUCGGCGG--------------UCCA---------GAAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 23077 0.66 0.865819
Target:  5'- --gCGGCGGCCguGCCcGGcaUCgugCGCGCg -3'
miRNA:   3'- gaaGCUGUCGG--CGGuCC--AGaa-GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 6631 0.66 0.873226
Target:  5'- --cCGGCAcGCCGCaGGGUUgaagaccgcCGCGCg -3'
miRNA:   3'- gaaGCUGU-CGGCGgUCCAGaa-------GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 22623 0.66 0.886697
Target:  5'- uCUUCGagccggcGCGGauCCGCgAGGcCUUCgGCGCg -3'
miRNA:   3'- -GAAGC-------UGUC--GGCGgUCCaGAAG-CGCG- -5'
25518 5' -56.3 NC_005337.1 + 79680 0.66 0.865067
Target:  5'- gUUCGGCgAGgUGCCcguggagAGGUCguucagcUCGCGCg -3'
miRNA:   3'- gAAGCUG-UCgGCGG-------UCCAGa------AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 39266 0.66 0.887384
Target:  5'- --gCGcaGCAGCCGCCGcug--UCGCGCa -3'
miRNA:   3'- gaaGC--UGUCGGCGGUccagaAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 83507 0.66 0.887384
Target:  5'- -gUCGuaggaGGgCGCgAGGUCgaugCGCGCg -3'
miRNA:   3'- gaAGCug---UCgGCGgUCCAGaa--GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 26742 0.66 0.894126
Target:  5'- -gUCGGugcucCGGUCGCCGcgaaacguGGUCgUCGUGCg -3'
miRNA:   3'- gaAGCU-----GUCGGCGGU--------CCAGaAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 59574 0.66 0.861273
Target:  5'- aCUUCGcCAGCCacgcggccagcauggGCCacAGGccCUUCGCGUu -3'
miRNA:   3'- -GAAGCuGUCGG---------------CGG--UCCa-GAAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 16700 0.66 0.873226
Target:  5'- --aCGGCGGCCuccgcuGCCGGGUga-CGCGUc -3'
miRNA:   3'- gaaGCUGUCGG------CGGUCCAgaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 27215 0.67 0.816303
Target:  5'- --cUGGCGcgccgccGCCGCCAGGUCcUCGuCGg -3'
miRNA:   3'- gaaGCUGU-------CGGCGGUCCAGaAGC-GCg -5'
25518 5' -56.3 NC_005337.1 + 8287 0.67 0.834143
Target:  5'- --gCGACGuGCaGCgGGGUCUgcagcCGCGCg -3'
miRNA:   3'- gaaGCUGU-CGgCGgUCCAGAa----GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 105087 0.67 0.825745
Target:  5'- cCUUCGGCAcgggcGCCGCCGcGUCUcCGgaGCu -3'
miRNA:   3'- -GAAGCUGU-----CGGCGGUcCAGAaGCg-CG- -5'
25518 5' -56.3 NC_005337.1 + 82795 0.67 0.825745
Target:  5'- --aCGGgAGCCGCCuuaucaGUCgccaUCGCGCc -3'
miRNA:   3'- gaaGCUgUCGGCGGuc----CAGa---AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 47308 0.67 0.825745
Target:  5'- --cCGAC-GCgCGCgAGGUCUUCGUcaacaGCa -3'
miRNA:   3'- gaaGCUGuCG-GCGgUCCAGAAGCG-----CG- -5'
25518 5' -56.3 NC_005337.1 + 28998 0.67 0.825745
Target:  5'- --gCGGCGGCCGCCcaGGGUCagccaCG-GCg -3'
miRNA:   3'- gaaGCUGUCGGCGG--UCCAGaa---GCgCG- -5'
25518 5' -56.3 NC_005337.1 + 20111 0.67 0.834143
Target:  5'- -gUgGACAGCUGUCgcauguGGGcCUUgGCGCg -3'
miRNA:   3'- gaAgCUGUCGGCGG------UCCaGAAgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.