Results 21 - 40 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 33006 | 0.72 | 0.581181 |
Target: 5'- -cUCGAUGGCCGCgA--UCUUCGCGUc -3' miRNA: 3'- gaAGCUGUCGGCGgUccAGAAGCGCG- -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 21751 | 0.71 | 0.59136 |
Target: 5'- uCUUCGuGCAcaugucgcagcGCUGCgAGGUCUUCGaCGCc -3' miRNA: 3'- -GAAGC-UGU-----------CGGCGgUCCAGAAGC-GCG- -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 121512 | 0.71 | 0.601568 |
Target: 5'- --gCGGCAGCgGC--GGUCUUCgGCGCg -3' miRNA: 3'- gaaGCUGUCGgCGguCCAGAAG-CGCG- -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 26933 | 0.71 | 0.605658 |
Target: 5'- ---aGAC-GCCGCCcacgccuuguggcuGGUCUUCGUGCg -3' miRNA: 3'- gaagCUGuCGGCGGu-------------CCAGAAGCGCG- -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 11535 | 0.71 | 0.611799 |
Target: 5'- ---gGGUGGCCGCCAGGUCgucCGCGg -3' miRNA: 3'- gaagCUGUCGGCGGUCCAGaa-GCGCg -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 68473 | 0.71 | 0.611799 |
Target: 5'- cCUUCGAC-GCCGCCgcaccGGG-CgcCGCGCu -3' miRNA: 3'- -GAAGCUGuCGGCGG-----UCCaGaaGCGCG- -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 99110 | 0.71 | 0.622046 |
Target: 5'- -gUCGAUAGCCucgcgaGCCGGcUCgUCGCGCc -3' miRNA: 3'- gaAGCUGUCGG------CGGUCcAGaAGCGCG- -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 83690 | 0.71 | 0.6323 |
Target: 5'- gCUUCGGCGcGUCGCgaCAGGcCUUCagGCGCg -3' miRNA: 3'- -GAAGCUGU-CGGCG--GUCCaGAAG--CGCG- -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 71231 | 0.71 | 0.6323 |
Target: 5'- -aUCGACAcgaacuaCCGCCcGGUCUUCGacCGCg -3' miRNA: 3'- gaAGCUGUc------GGCGGuCCAGAAGC--GCG- -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 10618 | 0.71 | 0.6323 |
Target: 5'- --gCGGCGG-CGCCAGGaCgaccgUCGCGCc -3' miRNA: 3'- gaaGCUGUCgGCGGUCCaGa----AGCGCG- -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 13779 | 0.71 | 0.638453 |
Target: 5'- --gCGAgGGgCGCCAGGUCguagcucgugucCGCGCg -3' miRNA: 3'- gaaGCUgUCgGCGGUCCAGaa----------GCGCG- -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 81094 | 0.7 | 0.673234 |
Target: 5'- gCUUUGacaGCAGCCGCCGGaGcacgUUGCGCa -3' miRNA: 3'- -GAAGC---UGUCGGCGGUC-Caga-AGCGCG- -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 119029 | 0.7 | 0.673234 |
Target: 5'- gUUCGGCGccggcGCCGCCAGGaccgguucgaccUCcUCGCGg -3' miRNA: 3'- gAAGCUGU-----CGGCGGUCC------------AGaAGCGCg -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 75918 | 0.7 | 0.673234 |
Target: 5'- -gUCGcCGGCCGCCAGGU--UCGUc- -3' miRNA: 3'- gaAGCuGUCGGCGGUCCAgaAGCGcg -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 133266 | 0.7 | 0.683404 |
Target: 5'- aUUCGACGGCCuCCAGGcgacgcccgcccUCcgcCGCGCc -3' miRNA: 3'- gAAGCUGUCGGcGGUCC------------AGaa-GCGCG- -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 3500 | 0.7 | 0.683404 |
Target: 5'- --cCGGCGGCgC-CCAGGUCUgCGCGa -3' miRNA: 3'- gaaGCUGUCG-GcGGUCCAGAaGCGCg -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 133266 | 0.7 | 0.683404 |
Target: 5'- aUUCGACGGCCuCCAGGcgacgcccgcccUCcgcCGCGCc -3' miRNA: 3'- gAAGCUGUCGGcGGUCC------------AGaa-GCGCG- -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 72592 | 0.7 | 0.683404 |
Target: 5'- --cCGAC-GCCuCCGGGUCg-CGCGCg -3' miRNA: 3'- gaaGCUGuCGGcGGUCCAGaaGCGCG- -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 84416 | 0.7 | 0.693533 |
Target: 5'- --gCGGCugcugauGCCGCCGGcGUCccggUUCGCGUg -3' miRNA: 3'- gaaGCUGu------CGGCGGUC-CAG----AAGCGCG- -5' |
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25518 | 5' | -56.3 | NC_005337.1 | + | 4657 | 0.7 | 0.693533 |
Target: 5'- --gCGGCcacgAGCCGCCGgacgagcuccacGGUCgcUCGCGCg -3' miRNA: 3'- gaaGCUG----UCGGCGGU------------CCAGa-AGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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