Results 1 - 20 of 123 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 124086 | 1.11 | 0.001785 |
Target: 5'- uCUUCGACAGCCGCCAGGUCUUCGCGCu -3' miRNA: 3'- -GAAGCUGUCGGCGGUCCAGAAGCGCG- -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 100874 | 0.77 | 0.299989 |
Target: 5'- --aCGGCGGCCGCCAGaGcuaCUUCGCGg -3' miRNA: 3'- gaaGCUGUCGGCGGUC-Ca--GAAGCGCg -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 21805 | 0.77 | 0.32883 |
Target: 5'- cCUUCGACGcGCCG-CAGcUCUUCGUGCg -3' miRNA: 3'- -GAAGCUGU-CGGCgGUCcAGAAGCGCG- -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 102349 | 0.74 | 0.445167 |
Target: 5'- gCUUCGACAuGCCGCCcgAGGc---CGCGCa -3' miRNA: 3'- -GAAGCUGU-CGGCGG--UCCagaaGCGCG- -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 25716 | 0.74 | 0.45433 |
Target: 5'- --cCGGCcgcGCCGCCAGcGUCaggCGCGCg -3' miRNA: 3'- gaaGCUGu--CGGCGGUC-CAGaa-GCGCG- -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 99189 | 0.74 | 0.467328 |
Target: 5'- --cCGACAuGCagCGCCAGGgccccgacagcggcuUCUUCGCGCg -3' miRNA: 3'- gaaGCUGU-CG--GCGGUCC---------------AGAAGCGCG- -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 71784 | 0.74 | 0.472016 |
Target: 5'- ---aGGCGGCCGCCccgcccgAGGUCggaGCGCa -3' miRNA: 3'- gaagCUGUCGGCGG-------UCCAGaagCGCG- -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 29518 | 0.73 | 0.501594 |
Target: 5'- gCUUCucCAGCaCGgC-GGUCUUCGCGCg -3' miRNA: 3'- -GAAGcuGUCG-GCgGuCCAGAAGCGCG- -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 77054 | 0.73 | 0.511309 |
Target: 5'- -cUCGuuAGCCGCCGaGUUUUCGCGg -3' miRNA: 3'- gaAGCugUCGGCGGUcCAGAAGCGCg -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 74244 | 0.73 | 0.521102 |
Target: 5'- ---gGGCGggucGCCGCgCGGGUCUcCGCGCg -3' miRNA: 3'- gaagCUGU----CGGCG-GUCCAGAaGCGCG- -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 34713 | 0.73 | 0.521102 |
Target: 5'- --aCGAgCAGCCGCaGGGcCUccUCGCGCg -3' miRNA: 3'- gaaGCU-GUCGGCGgUCCaGA--AGCGCG- -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 107069 | 0.73 | 0.530966 |
Target: 5'- --gCGGCGGCgCGCCAGGgggugccgCUgUGCGCg -3' miRNA: 3'- gaaGCUGUCG-GCGGUCCa-------GAaGCGCG- -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 42891 | 0.72 | 0.550892 |
Target: 5'- ---gGGC-GCCGCCgAGGUCUUCGaGCg -3' miRNA: 3'- gaagCUGuCGGCGG-UCCAGAAGCgCG- -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 51531 | 0.72 | 0.56094 |
Target: 5'- uCUUCGGCgugcGGCUGCCGGGcCUggaggcCGCGUu -3' miRNA: 3'- -GAAGCUG----UCGGCGGUCCaGAa-----GCGCG- -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 765 | 0.72 | 0.56094 |
Target: 5'- -cUCGACGGCgGCCAuGUgCUgCGCGCc -3' miRNA: 3'- gaAGCUGUCGgCGGUcCA-GAaGCGCG- -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 765 | 0.72 | 0.56094 |
Target: 5'- -cUCGACGGCgGCCAuGUgCUgCGCGCc -3' miRNA: 3'- gaAGCUGUCGgCGGUcCA-GAaGCGCG- -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 15496 | 0.72 | 0.56094 |
Target: 5'- --aCGGCGccGCCGCCGGcGUCaucuaggacgUCGCGCa -3' miRNA: 3'- gaaGCUGU--CGGCGGUC-CAGa---------AGCGCG- -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 116031 | 0.72 | 0.571039 |
Target: 5'- --aCGACAGuuGC--GGUCUUCGCaGCg -3' miRNA: 3'- gaaGCUGUCggCGguCCAGAAGCG-CG- -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 107560 | 0.72 | 0.581181 |
Target: 5'- ---gGACGGCaaCGCCGcGGUCUUCGCccGCg -3' miRNA: 3'- gaagCUGUCG--GCGGU-CCAGAAGCG--CG- -5' |
|||||||
25518 | 5' | -56.3 | NC_005337.1 | + | 53676 | 0.72 | 0.581181 |
Target: 5'- -gUCGGCGGCCGCaAGGaggcCGCGCu -3' miRNA: 3'- gaAGCUGUCGGCGgUCCagaaGCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home