miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25518 5' -56.3 NC_005337.1 + 765 0.72 0.56094
Target:  5'- -cUCGACGGCgGCCAuGUgCUgCGCGCc -3'
miRNA:   3'- gaAGCUGUCGgCGGUcCA-GAaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 765 0.72 0.56094
Target:  5'- -cUCGACGGCgGCCAuGUgCUgCGCGCc -3'
miRNA:   3'- gaAGCUGUCGgCGGUcCA-GAaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 2479 0.67 0.842356
Target:  5'- -cUCGGCGGCUauguUCGGGUacgCGCGCa -3'
miRNA:   3'- gaAGCUGUCGGc---GGUCCAgaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 3418 0.67 0.825745
Target:  5'- -gUUGAgGGCCGUCGGGUCgcaGCcgaGCu -3'
miRNA:   3'- gaAGCUgUCGGCGGUCCAGaagCG---CG- -5'
25518 5' -56.3 NC_005337.1 + 3500 0.7 0.683404
Target:  5'- --cCGGCGGCgC-CCAGGUCUgCGCGa -3'
miRNA:   3'- gaaGCUGUCG-GcGGUCCAGAaGCGCg -5'
25518 5' -56.3 NC_005337.1 + 4657 0.7 0.693533
Target:  5'- --gCGGCcacgAGCCGCCGgacgagcuccacGGUCgcUCGCGCg -3'
miRNA:   3'- gaaGCUG----UCGGCGGU------------CCAGa-AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 5878 0.66 0.880416
Target:  5'- --gCGagaGCGGCCGCCAGcauggacucGUCgugUCGCGa -3'
miRNA:   3'- gaaGC---UGUCGGCGGUC---------CAGa--AGCGCg -5'
25518 5' -56.3 NC_005337.1 + 6587 0.68 0.762475
Target:  5'- -gUCG-CGGCCaccggcGCCAGGUCg--GCGCc -3'
miRNA:   3'- gaAGCuGUCGG------CGGUCCAGaagCGCG- -5'
25518 5' -56.3 NC_005337.1 + 6631 0.66 0.873226
Target:  5'- --cCGGCAcGCCGCaGGGUUgaagaccgcCGCGCg -3'
miRNA:   3'- gaaGCUGU-CGGCGgUCCAGaa-------GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 7228 0.66 0.887384
Target:  5'- cCUUCGgugcGCAccuccgcgcccGCCGCCAgcauGGUCUccacgaCGCGCa -3'
miRNA:   3'- -GAAGC----UGU-----------CGGCGGU----CCAGAa-----GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 7830 0.66 0.858201
Target:  5'- --gCGACAGCgCGCgGuGGUacaCGCGCa -3'
miRNA:   3'- gaaGCUGUCG-GCGgU-CCAgaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 8287 0.67 0.834143
Target:  5'- --gCGACGuGCaGCgGGGUCUgcagcCGCGCg -3'
miRNA:   3'- gaaGCUGU-CGgCGgUCCAGAa----GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 9116 0.69 0.711627
Target:  5'- -gUCGGCGGUCuCCAGGUaccgguacagCGCGCu -3'
miRNA:   3'- gaAGCUGUCGGcGGUCCAgaa-------GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 10618 0.71 0.6323
Target:  5'- --gCGGCGG-CGCCAGGaCgaccgUCGCGCc -3'
miRNA:   3'- gaaGCUGUCgGCGGUCCaGa----AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 11535 0.71 0.611799
Target:  5'- ---gGGUGGCCGCCAGGUCgucCGCGg -3'
miRNA:   3'- gaagCUGUCGGCGGUCCAGaa-GCGCg -5'
25518 5' -56.3 NC_005337.1 + 12255 0.68 0.808426
Target:  5'- -cUCGAgCAuguccgucGCgGCCGGGUCgcaccccgCGCGCa -3'
miRNA:   3'- gaAGCU-GU--------CGgCGGUCCAGaa------GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 13779 0.71 0.638453
Target:  5'- --gCGAgGGgCGCCAGGUCguagcucgugucCGCGCg -3'
miRNA:   3'- gaaGCUgUCgGCGGUCCAGaa----------GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 13909 0.67 0.825745
Target:  5'- --cCGGCAgGCgCGCCGGGUCccgaaggaCGCGUu -3'
miRNA:   3'- gaaGCUGU-CG-GCGGUCCAGaa------GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 15496 0.72 0.56094
Target:  5'- --aCGGCGccGCCGCCGGcGUCaucuaggacgUCGCGCa -3'
miRNA:   3'- gaaGCUGU--CGGCGGUC-CAGa---------AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 16017 0.69 0.703609
Target:  5'- --aCGcGCGGCCGgCAGGUacaCGCGCu -3'
miRNA:   3'- gaaGC-UGUCGGCgGUCCAgaaGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.