miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25518 5' -56.3 NC_005337.1 + 133266 0.7 0.683404
Target:  5'- aUUCGACGGCCuCCAGGcgacgcccgcccUCcgcCGCGCc -3'
miRNA:   3'- gAAGCUGUCGGcGGUCC------------AGaa-GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 133266 0.7 0.683404
Target:  5'- aUUCGACGGCCuCCAGGcgacgcccgcccUCcgcCGCGCc -3'
miRNA:   3'- gAAGCUGUCGGcGGUCC------------AGaa-GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 131221 0.67 0.850378
Target:  5'- --gCGcUAGCCGCCGGuGUgUggcguacguggUCGCGCa -3'
miRNA:   3'- gaaGCuGUCGGCGGUC-CAgA-----------AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 130740 0.67 0.81717
Target:  5'- -cUCG-UGGCCGCUGGGUCcgacgUGUGCa -3'
miRNA:   3'- gaAGCuGUCGGCGGUCCAGaa---GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 124086 1.11 0.001785
Target:  5'- uCUUCGACAGCCGCCAGGUCUUCGCGCu -3'
miRNA:   3'- -GAAGCUGUCGGCGGUCCAGAAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 123598 0.68 0.798623
Target:  5'- cCUUCGAgGagaacccGCCGCC-GGcCggCGCGCg -3'
miRNA:   3'- -GAAGCUgU-------CGGCGGuCCaGaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 121512 0.71 0.601568
Target:  5'- --gCGGCAGCgGC--GGUCUUCgGCGCg -3'
miRNA:   3'- gaaGCUGUCGgCGguCCAGAAG-CGCG- -5'
25518 5' -56.3 NC_005337.1 + 119029 0.7 0.673234
Target:  5'- gUUCGGCGccggcGCCGCCAGGaccgguucgaccUCcUCGCGg -3'
miRNA:   3'- gAAGCUGU-----CGGCGGUCC------------AGaAGCGCg -5'
25518 5' -56.3 NC_005337.1 + 118915 0.66 0.887384
Target:  5'- --cCGAguGCgCGCCuGGaagCgUCGCGCg -3'
miRNA:   3'- gaaGCUguCG-GCGGuCCa--GaAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 118503 0.67 0.847992
Target:  5'- --gCGACuAGCCGCCucguccgcaauuucAGGUC--CGUGCa -3'
miRNA:   3'- gaaGCUG-UCGGCGG--------------UCCAGaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 118137 0.68 0.781267
Target:  5'- aCUUCGACGugugcgguGCCGCCauggAGGUUgacgGCGCc -3'
miRNA:   3'- -GAAGCUGU--------CGGCGG----UCCAGaag-CGCG- -5'
25518 5' -56.3 NC_005337.1 + 117156 0.68 0.781267
Target:  5'- --aCGACGGCggcgaguucUGCCGGG-CgcacUCGCGCg -3'
miRNA:   3'- gaaGCUGUCG---------GCGGUCCaGa---AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 116998 0.67 0.81717
Target:  5'- -cUCGACAGCuucaacgugCGCCAGGccacgCUcCGgGCg -3'
miRNA:   3'- gaAGCUGUCG---------GCGGUCCa----GAaGCgCG- -5'
25518 5' -56.3 NC_005337.1 + 116031 0.72 0.571039
Target:  5'- --aCGACAGuuGC--GGUCUUCGCaGCg -3'
miRNA:   3'- gaaGCUGUCggCGguCCAGAAGCG-CG- -5'
25518 5' -56.3 NC_005337.1 + 113599 0.66 0.858201
Target:  5'- -gUCGACGGgugcCCGCCccucuGGUC--CGCGCc -3'
miRNA:   3'- gaAGCUGUC----GGCGGu----CCAGaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 110371 0.67 0.842356
Target:  5'- --gCGGCAGCCGUCccacgggcgugGGGUUgcugaugCGCGUg -3'
miRNA:   3'- gaaGCUGUCGGCGG-----------UCCAGaa-----GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 110328 0.67 0.825745
Target:  5'- gUUCGGCc-CgGCCGGG-CggcgUCGCGCg -3'
miRNA:   3'- gAAGCUGucGgCGGUCCaGa---AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 109517 0.67 0.842356
Target:  5'- --aUGaACGG-UGCCAGGUCcUCGUGCu -3'
miRNA:   3'- gaaGC-UGUCgGCGGUCCAGaAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 108637 0.66 0.887384
Target:  5'- -aUCGACgcGGCCGUggCGGG-CgacCGCGCg -3'
miRNA:   3'- gaAGCUG--UCGGCG--GUCCaGaa-GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 107560 0.72 0.581181
Target:  5'- ---gGACGGCaaCGCCGcGGUCUUCGCccGCg -3'
miRNA:   3'- gaagCUGUCG--GCGGU-CCAGAAGCG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.