miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25518 5' -56.3 NC_005337.1 + 16017 0.69 0.703609
Target:  5'- --aCGcGCGGCCGgCAGGUacaCGCGCu -3'
miRNA:   3'- gaaGC-UGUCGGCgGUCCAgaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 53676 0.72 0.581181
Target:  5'- -gUCGGCGGCCGCaAGGaggcCGCGCu -3'
miRNA:   3'- gaAGCUGUCGGCGgUCCagaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 21751 0.71 0.59136
Target:  5'- uCUUCGuGCAcaugucgcagcGCUGCgAGGUCUUCGaCGCc -3'
miRNA:   3'- -GAAGC-UGU-----------CGGCGgUCCAGAAGC-GCG- -5'
25518 5' -56.3 NC_005337.1 + 26933 0.71 0.605658
Target:  5'- ---aGAC-GCCGCCcacgccuuguggcuGGUCUUCGUGCg -3'
miRNA:   3'- gaagCUGuCGGCGGu-------------CCAGAAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 68473 0.71 0.611799
Target:  5'- cCUUCGAC-GCCGCCgcaccGGG-CgcCGCGCu -3'
miRNA:   3'- -GAAGCUGuCGGCGG-----UCCaGaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 71231 0.71 0.6323
Target:  5'- -aUCGACAcgaacuaCCGCCcGGUCUUCGacCGCg -3'
miRNA:   3'- gaAGCUGUc------GGCGGuCCAGAAGC--GCG- -5'
25518 5' -56.3 NC_005337.1 + 13779 0.71 0.638453
Target:  5'- --gCGAgGGgCGCCAGGUCguagcucgugucCGCGCg -3'
miRNA:   3'- gaaGCUgUCgGCGGUCCAGaa----------GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 81094 0.7 0.673234
Target:  5'- gCUUUGacaGCAGCCGCCGGaGcacgUUGCGCa -3'
miRNA:   3'- -GAAGC---UGUCGGCGGUC-Caga-AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 133266 0.7 0.683404
Target:  5'- aUUCGACGGCCuCCAGGcgacgcccgcccUCcgcCGCGCc -3'
miRNA:   3'- gAAGCUGUCGGcGGUCC------------AGaa-GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 116031 0.72 0.571039
Target:  5'- --aCGACAGuuGC--GGUCUUCGCaGCg -3'
miRNA:   3'- gaaGCUGUCggCGguCCAGAAGCG-CG- -5'
25518 5' -56.3 NC_005337.1 + 765 0.72 0.56094
Target:  5'- -cUCGACGGCgGCCAuGUgCUgCGCGCc -3'
miRNA:   3'- gaAGCUGUCGgCGGUcCA-GAaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 15496 0.72 0.56094
Target:  5'- --aCGGCGccGCCGCCGGcGUCaucuaggacgUCGCGCa -3'
miRNA:   3'- gaaGCUGU--CGGCGGUC-CAGa---------AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 21805 0.77 0.32883
Target:  5'- cCUUCGACGcGCCG-CAGcUCUUCGUGCg -3'
miRNA:   3'- -GAAGCUGU-CGGCgGUCcAGAAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 102349 0.74 0.445167
Target:  5'- gCUUCGACAuGCCGCCcgAGGc---CGCGCa -3'
miRNA:   3'- -GAAGCUGU-CGGCGG--UCCagaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 25716 0.74 0.45433
Target:  5'- --cCGGCcgcGCCGCCAGcGUCaggCGCGCg -3'
miRNA:   3'- gaaGCUGu--CGGCGGUC-CAGaa-GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 71784 0.74 0.472016
Target:  5'- ---aGGCGGCCGCCccgcccgAGGUCggaGCGCa -3'
miRNA:   3'- gaagCUGUCGGCGG-------UCCAGaagCGCG- -5'
25518 5' -56.3 NC_005337.1 + 29518 0.73 0.501594
Target:  5'- gCUUCucCAGCaCGgC-GGUCUUCGCGCg -3'
miRNA:   3'- -GAAGcuGUCG-GCgGuCCAGAAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 77054 0.73 0.511309
Target:  5'- -cUCGuuAGCCGCCGaGUUUUCGCGg -3'
miRNA:   3'- gaAGCugUCGGCGGUcCAGAAGCGCg -5'
25518 5' -56.3 NC_005337.1 + 74244 0.73 0.521102
Target:  5'- ---gGGCGggucGCCGCgCGGGUCUcCGCGCg -3'
miRNA:   3'- gaagCUGU----CGGCG-GUCCAGAaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 42891 0.72 0.550892
Target:  5'- ---gGGC-GCCGCCgAGGUCUUCGaGCg -3'
miRNA:   3'- gaagCUGuCGGCGG-UCCAGAAGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.