miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25518 5' -56.3 NC_005337.1 + 124086 1.11 0.001785
Target:  5'- uCUUCGACAGCCGCCAGGUCUUCGCGCu -3'
miRNA:   3'- -GAAGCUGUCGGCGGUCCAGAAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 133266 0.7 0.683404
Target:  5'- aUUCGACGGCCuCCAGGcgacgcccgcccUCcgcCGCGCc -3'
miRNA:   3'- gAAGCUGUCGGcGGUCC------------AGaa-GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 4657 0.7 0.693533
Target:  5'- --gCGGCcacgAGCCGCCGgacgagcuccacGGUCgcUCGCGCg -3'
miRNA:   3'- gaaGCUG----UCGGCGGU------------CCAGa-AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 77390 0.66 0.894126
Target:  5'- -gUUGAauGgCGCCAGGaUCUUCGuCGCc -3'
miRNA:   3'- gaAGCUguCgGCGGUCC-AGAAGC-GCG- -5'
25518 5' -56.3 NC_005337.1 + 51531 0.72 0.56094
Target:  5'- uCUUCGGCgugcGGCUGCCGGGcCUggaggcCGCGUu -3'
miRNA:   3'- -GAAGCUG----UCGGCGGUCCaGAa-----GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 765 0.72 0.56094
Target:  5'- -cUCGACGGCgGCCAuGUgCUgCGCGCc -3'
miRNA:   3'- gaAGCUGUCGgCGGUcCA-GAaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 33006 0.72 0.581181
Target:  5'- -cUCGAUGGCCGCgA--UCUUCGCGUc -3'
miRNA:   3'- gaAGCUGUCGGCGgUccAGAAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 121512 0.71 0.601568
Target:  5'- --gCGGCAGCgGC--GGUCUUCgGCGCg -3'
miRNA:   3'- gaaGCUGUCGgCGguCCAGAAG-CGCG- -5'
25518 5' -56.3 NC_005337.1 + 10618 0.71 0.6323
Target:  5'- --gCGGCGG-CGCCAGGaCgaccgUCGCGCc -3'
miRNA:   3'- gaaGCUGUCgGCGGUCCaGa----AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 72592 0.7 0.683404
Target:  5'- --cCGAC-GCCuCCGGGUCg-CGCGCg -3'
miRNA:   3'- gaaGCUGuCGGcGGUCCAGaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 119029 0.7 0.673234
Target:  5'- gUUCGGCGccggcGCCGCCAGGaccgguucgaccUCcUCGCGg -3'
miRNA:   3'- gAAGCUGU-----CGGCGGUCC------------AGaAGCGCg -5'
25518 5' -56.3 NC_005337.1 + 99110 0.71 0.622046
Target:  5'- -gUCGAUAGCCucgcgaGCCGGcUCgUCGCGCc -3'
miRNA:   3'- gaAGCUGUCGG------CGGUCcAGaAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 99189 0.74 0.467328
Target:  5'- --cCGACAuGCagCGCCAGGgccccgacagcggcuUCUUCGCGCg -3'
miRNA:   3'- gaaGCUGU-CG--GCGGUCC---------------AGAAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 75918 0.7 0.673234
Target:  5'- -gUCGcCGGCCGCCAGGU--UCGUc- -3'
miRNA:   3'- gaAGCuGUCGGCGGUCCAgaAGCGcg -5'
25518 5' -56.3 NC_005337.1 + 34713 0.73 0.521102
Target:  5'- --aCGAgCAGCCGCaGGGcCUccUCGCGCg -3'
miRNA:   3'- gaaGCU-GUCGGCGgUCCaGA--AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 11535 0.71 0.611799
Target:  5'- ---gGGUGGCCGCCAGGUCgucCGCGg -3'
miRNA:   3'- gaagCUGUCGGCGGUCCAGaa-GCGCg -5'
25518 5' -56.3 NC_005337.1 + 3500 0.7 0.683404
Target:  5'- --cCGGCGGCgC-CCAGGUCUgCGCGa -3'
miRNA:   3'- gaaGCUGUCG-GcGGUCCAGAaGCGCg -5'
25518 5' -56.3 NC_005337.1 + 84416 0.7 0.693533
Target:  5'- --gCGGCugcugauGCCGCCGGcGUCccggUUCGCGUg -3'
miRNA:   3'- gaaGCUGu------CGGCGGUC-CAG----AAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 107069 0.73 0.530966
Target:  5'- --gCGGCGGCgCGCCAGGgggugccgCUgUGCGCg -3'
miRNA:   3'- gaaGCUGUCG-GCGGUCCa-------GAaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 107560 0.72 0.581181
Target:  5'- ---gGACGGCaaCGCCGcGGUCUUCGCccGCg -3'
miRNA:   3'- gaagCUGUCG--GCGGU-CCAGAAGCG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.