miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25518 5' -56.3 NC_005337.1 + 16660 0.67 0.850378
Target:  5'- --gCGGCGGCCGgUcgagacgaGGGUCgacagcaucUCGCGCa -3'
miRNA:   3'- gaaGCUGUCGGCgG--------UCCAGa--------AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 16700 0.66 0.873226
Target:  5'- --aCGGCGGCCuccgcuGCCGGGUga-CGCGUc -3'
miRNA:   3'- gaaGCUGUCGG------CGGUCCAgaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 17179 0.66 0.880416
Target:  5'- --cCGACAG-CGCCAGcagggCGCGCg -3'
miRNA:   3'- gaaGCUGUCgGCGGUCcagaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 20111 0.67 0.834143
Target:  5'- -gUgGACAGCUGUCgcauguGGGcCUUgGCGCg -3'
miRNA:   3'- gaAgCUGUCGGCGG------UCCaGAAgCGCG- -5'
25518 5' -56.3 NC_005337.1 + 20198 0.69 0.7529
Target:  5'- -aUCG-CGGCCGUgAGGUagaaCGCGCc -3'
miRNA:   3'- gaAGCuGUCGGCGgUCCAgaa-GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 21751 0.71 0.59136
Target:  5'- uCUUCGuGCAcaugucgcagcGCUGCgAGGUCUUCGaCGCc -3'
miRNA:   3'- -GAAGC-UGU-----------CGGCGgUCCAGAAGC-GCG- -5'
25518 5' -56.3 NC_005337.1 + 21805 0.77 0.32883
Target:  5'- cCUUCGACGcGCCG-CAGcUCUUCGUGCg -3'
miRNA:   3'- -GAAGCUGU-CGGCgGUCcAGAAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 22623 0.66 0.886697
Target:  5'- uCUUCGagccggcGCGGauCCGCgAGGcCUUCgGCGCg -3'
miRNA:   3'- -GAAGC-------UGUC--GGCGgUCCaGAAG-CGCG- -5'
25518 5' -56.3 NC_005337.1 + 23077 0.66 0.865819
Target:  5'- --gCGGCGGCCguGCCcGGcaUCgugCGCGCg -3'
miRNA:   3'- gaaGCUGUCGG--CGGuCC--AGaa-GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 23863 0.66 0.873226
Target:  5'- cCUUCGACcGCgCGUUcucgGGGUUcaCGCGCa -3'
miRNA:   3'- -GAAGCUGuCG-GCGG----UCCAGaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 25192 0.68 0.781267
Target:  5'- -cUCGGCcGCgGCCAuGUUcgUCGCGCu -3'
miRNA:   3'- gaAGCUGuCGgCGGUcCAGa-AGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 25716 0.74 0.45433
Target:  5'- --cCGGCcgcGCCGCCAGcGUCaggCGCGCg -3'
miRNA:   3'- gaaGCUGu--CGGCGGUC-CAGaa-GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 26742 0.66 0.894126
Target:  5'- -gUCGGugcucCGGUCGCCGcgaaacguGGUCgUCGUGCg -3'
miRNA:   3'- gaAGCU-----GUCGGCGGU--------CCAGaAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 26933 0.71 0.605658
Target:  5'- ---aGAC-GCCGCCcacgccuuguggcuGGUCUUCGUGCg -3'
miRNA:   3'- gaagCUGuCGGCGGu-------------CCAGAAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 27215 0.67 0.816303
Target:  5'- --cUGGCGcgccgccGCCGCCAGGUCcUCGuCGg -3'
miRNA:   3'- gaaGCUGU-------CGGCGGUCCAGaAGC-GCg -5'
25518 5' -56.3 NC_005337.1 + 27523 0.66 0.857428
Target:  5'- aUUCGuuGGuuGCCAGGUUuaagucuUUgGUGCa -3'
miRNA:   3'- gAAGCugUCggCGGUCCAG-------AAgCGCG- -5'
25518 5' -56.3 NC_005337.1 + 28998 0.67 0.825745
Target:  5'- --gCGGCGGCCGCCcaGGGUCagccaCG-GCg -3'
miRNA:   3'- gaaGCUGUCGGCGG--UCCAGaa---GCgCG- -5'
25518 5' -56.3 NC_005337.1 + 29518 0.73 0.501594
Target:  5'- gCUUCucCAGCaCGgC-GGUCUUCGCGCg -3'
miRNA:   3'- -GAAGcuGUCG-GCgGuCCAGAAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 30585 0.68 0.808426
Target:  5'- -gUCGACcuuGuuGCgCAGGUC--CGCGCu -3'
miRNA:   3'- gaAGCUGu--CggCG-GUCCAGaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 31879 0.66 0.880416
Target:  5'- --cCGugGGCa--C-GGUCUUCGCGCu -3'
miRNA:   3'- gaaGCugUCGgcgGuCCAGAAGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.