miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 78154 0.67 0.782272
Target:  5'- -cGCGC-ACGCuGGCGAUgcCGUGCg-CCu -3'
miRNA:   3'- caCGCGcUGCG-CCGCUA--GCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 65533 0.67 0.782272
Target:  5'- gGUGCGCGuGCGCucgaaagaGGUGAUCGcgGaCUUCa -3'
miRNA:   3'- -CACGCGC-UGCG--------CCGCUAGCa-C-GAAGg -5'
25520 5' -57.2 NC_005337.1 + 16749 0.67 0.791379
Target:  5'- uGUGCGCGGuCaCGGCGcgccggcugauGUCGUGCa-CCg -3'
miRNA:   3'- -CACGCGCU-GcGCCGC-----------UAGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 78983 0.67 0.791379
Target:  5'- gGUGCGUGGCGCGGCuGUag-GCc-CCg -3'
miRNA:   3'- -CACGCGCUGCGCCGcUAgcaCGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 3378 0.67 0.791379
Target:  5'- uGUGCGCGGCcaugagguGCaGCGG-CGUGUUgCCg -3'
miRNA:   3'- -CACGCGCUG--------CGcCGCUaGCACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 74544 0.67 0.791379
Target:  5'- -cGCGCuccgccGCGCGGCGcgUGaUGCUggCCg -3'
miRNA:   3'- caCGCGc-----UGCGCCGCuaGC-ACGAa-GG- -5'
25520 5' -57.2 NC_005337.1 + 1433 0.67 0.817818
Target:  5'- cGUG-GUGuAUGcCGGCGAUCGUGCa--- -3'
miRNA:   3'- -CACgCGC-UGC-GCCGCUAGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 121989 0.67 0.791379
Target:  5'- cGUGCGCGAgcuccUGCGcGCGGg-GUGCgacCCg -3'
miRNA:   3'- -CACGCGCU-----GCGC-CGCUagCACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 15336 0.67 0.800345
Target:  5'- -cGCGCGACGCacgcuGCGcccgCGcgacGCUUCCa -3'
miRNA:   3'- caCGCGCUGCGc----CGCua--GCa---CGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 52089 0.67 0.782272
Target:  5'- cGUGCGCGcC-CGGCGGccgCGUGCa--- -3'
miRNA:   3'- -CACGCGCuGcGCCGCUa--GCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 38594 0.67 0.782272
Target:  5'- -gGCGUGGCGCGaGCGcagcgugggCGUGCUggggaacCCg -3'
miRNA:   3'- caCGCGCUGCGC-CGCua-------GCACGAa------GG- -5'
25520 5' -57.2 NC_005337.1 + 52576 0.67 0.817818
Target:  5'- -cGCGgggaCGGCGCGGCGG-CGcugGCggCCa -3'
miRNA:   3'- caCGC----GCUGCGCCGCUaGCa--CGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 34010 0.67 0.817818
Target:  5'- uUGCGCG-CGCGGUag--GUGCUcCCg -3'
miRNA:   3'- cACGCGCuGCGCCGcuagCACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 44852 0.67 0.800345
Target:  5'- -cGCGCGGCGauGCGucCGUGCUa-- -3'
miRNA:   3'- caCGCGCUGCgcCGCuaGCACGAagg -5'
25520 5' -57.2 NC_005337.1 + 56137 0.67 0.800345
Target:  5'- cGUGCGCGGCGUGcaGCGGggCG-GCaaggCCg -3'
miRNA:   3'- -CACGCGCUGCGC--CGCUa-GCaCGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 80373 0.67 0.800345
Target:  5'- -cGCGcCGGuCGCGGaccCGGUCGUGUggcugCCg -3'
miRNA:   3'- caCGC-GCU-GCGCC---GCUAGCACGaa---GG- -5'
25520 5' -57.2 NC_005337.1 + 9931 0.67 0.809161
Target:  5'- -aGCGCGGCcuGauGCGAUCGcGCcgcgUCCa -3'
miRNA:   3'- caCGCGCUG--CgcCGCUAGCaCGa---AGG- -5'
25520 5' -57.2 NC_005337.1 + 85888 0.67 0.809161
Target:  5'- cGUGCGCGgcucgaagGCGCGGCuGA-CGUuCUcgUCCa -3'
miRNA:   3'- -CACGCGC--------UGCGCCG-CUaGCAcGA--AGG- -5'
25520 5' -57.2 NC_005337.1 + 130176 0.67 0.809161
Target:  5'- -cGCGCG-CGCGGUGAggaCGcUGCUg-- -3'
miRNA:   3'- caCGCGCuGCGCCGCUa--GC-ACGAagg -5'
25520 5' -57.2 NC_005337.1 + 919 0.67 0.817818
Target:  5'- -aGCGCGGCgGCGGCGG-CGagGCggCg -3'
miRNA:   3'- caCGCGCUG-CGCCGCUaGCa-CGaaGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.