miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 41631 0.66 0.858456
Target:  5'- -gGUGCGACGCccGGCGucucCGUGgaUCg -3'
miRNA:   3'- caCGCGCUGCG--CCGCua--GCACgaAGg -5'
25520 5' -57.2 NC_005337.1 + 52053 0.66 0.858456
Target:  5'- cUGCaCGGCGgaGGCGGgccgCGUGCUguaCCu -3'
miRNA:   3'- cACGcGCUGCg-CCGCUa---GCACGAa--GG- -5'
25520 5' -57.2 NC_005337.1 + 61094 0.66 0.866004
Target:  5'- -gGCGaCGAgGCGGUGGUaGUGCgcguugagcUCCu -3'
miRNA:   3'- caCGC-GCUgCGCCGCUAgCACGa--------AGG- -5'
25520 5' -57.2 NC_005337.1 + 989 0.66 0.858456
Target:  5'- -gGCGCGGCGCgcggagGGCGggCGUcGCcuggaggCCg -3'
miRNA:   3'- caCGCGCUGCG------CCGCuaGCA-CGaa-----GG- -5'
25520 5' -57.2 NC_005337.1 + 115146 0.66 0.84276
Target:  5'- -cGCGCGugGCGGaGG-CcUGCgUCCg -3'
miRNA:   3'- caCGCGCugCGCCgCUaGcACGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 70360 0.66 0.861499
Target:  5'- gGUGCGcCGcCGCacGUGGUCGcguccguagaaguacUGCUUCCg -3'
miRNA:   3'- -CACGC-GCuGCGc-CGCUAGC---------------ACGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 39939 0.66 0.858456
Target:  5'- cGUGCGCGGCG-GGCGccUCGcGCg--- -3'
miRNA:   3'- -CACGCGCUGCgCCGCu-AGCaCGaagg -5'
25520 5' -57.2 NC_005337.1 + 44519 0.66 0.850706
Target:  5'- -cGCGCu-CGCGGCGGagcuccUCG-GCUaCCg -3'
miRNA:   3'- caCGCGcuGCGCCGCU------AGCaCGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 47968 0.66 0.850706
Target:  5'- -cGCGCGAgUGCGGCG--CGgacGCgUCCa -3'
miRNA:   3'- caCGCGCU-GCGCCGCuaGCa--CGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 66000 0.66 0.866004
Target:  5'- cGUGCGUccCGUgGGCGAgcgCGUGUgggCCa -3'
miRNA:   3'- -CACGCGcuGCG-CCGCUa--GCACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 56206 0.66 0.866004
Target:  5'- -cGCGCuaccugcagGACGUGGCGGaggggcggaUCGUGC--CCa -3'
miRNA:   3'- caCGCG---------CUGCGCCGCU---------AGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 39228 0.66 0.858456
Target:  5'- cGUGCGCGacaacGCGCaGGCGuUCcUGCccgCCg -3'
miRNA:   3'- -CACGCGC-----UGCG-CCGCuAGcACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 92395 0.66 0.858456
Target:  5'- -gGaCGCGACGuCGGgGA-CGUGCUggggCUc -3'
miRNA:   3'- caC-GCGCUGC-GCCgCUaGCACGAa---GG- -5'
25520 5' -57.2 NC_005337.1 + 130536 0.66 0.829657
Target:  5'- gGUGCGCGcgggcgccaacgucaACGaCGG-GAUCG-GCUUCa -3'
miRNA:   3'- -CACGCGC---------------UGC-GCCgCUAGCaCGAAGg -5'
25520 5' -57.2 NC_005337.1 + 24498 0.66 0.850706
Target:  5'- gGUGCGCGGCGaCGcGCucGAgccCGUGCccaagCCg -3'
miRNA:   3'- -CACGCGCUGC-GC-CG--CUa--GCACGaa---GG- -5'
25520 5' -57.2 NC_005337.1 + 989 0.66 0.858456
Target:  5'- -gGCGCGGCGCgcggagGGCGggCGUcGCcuggaggCCg -3'
miRNA:   3'- caCGCGCUGCG------CCGCuaGCA-CGaa-----GG- -5'
25520 5' -57.2 NC_005337.1 + 108209 0.66 0.858456
Target:  5'- -cGCGCuacauUGCGGUGG-CGUGCgagCCg -3'
miRNA:   3'- caCGCGcu---GCGCCGCUaGCACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 95755 0.66 0.850706
Target:  5'- cGUGCacgauccccGCGAuCGCGGCGAcgUCGU-CggCCa -3'
miRNA:   3'- -CACG---------CGCU-GCGCCGCU--AGCAcGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 96884 0.66 0.84276
Target:  5'- aUGCGCGGCGUGGaCG-UCG-GCg--- -3'
miRNA:   3'- cACGCGCUGCGCC-GCuAGCaCGaagg -5'
25520 5' -57.2 NC_005337.1 + 3378 0.67 0.791379
Target:  5'- uGUGCGCGGCcaugagguGCaGCGG-CGUGUUgCCg -3'
miRNA:   3'- -CACGCGCUG--------CGcCGCUaGCACGAaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.