miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 13763 0.71 0.553914
Target:  5'- -cGCGCGcccgaACGCGGCGAggggcgccaggUCGUaGCUcgugUCCg -3'
miRNA:   3'- caCGCGC-----UGCGCCGCU-----------AGCA-CGA----AGG- -5'
25520 5' -57.2 NC_005337.1 + 13927 0.68 0.773031
Target:  5'- cGUGgGCgGGCGCaGCcccGUCGUGCU-CCa -3'
miRNA:   3'- -CACgCG-CUGCGcCGc--UAGCACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 14864 0.68 0.763666
Target:  5'- -gGCGCGACG-GGCGAga---CUUCCg -3'
miRNA:   3'- caCGCGCUGCgCCGCUagcacGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 15336 0.67 0.800345
Target:  5'- -cGCGCGACGCacgcuGCGcccgCGcgacGCUUCCa -3'
miRNA:   3'- caCGCGCUGCGc----CGCua--GCa---CGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 15874 0.68 0.725144
Target:  5'- aUGCGCGACGUGGUGAugaUCaucGCcaUCCu -3'
miRNA:   3'- cACGCGCUGCGCCGCU---AGca-CGa-AGG- -5'
25520 5' -57.2 NC_005337.1 + 16749 0.67 0.791379
Target:  5'- uGUGCGCGGuCaCGGCGcgccggcugauGUCGUGCa-CCg -3'
miRNA:   3'- -CACGCGCU-GcGCCGC-----------UAGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 23064 0.73 0.48584
Target:  5'- -cGCGCGccggaACGCGGCGGcCGUGC--CCg -3'
miRNA:   3'- caCGCGC-----UGCGCCGCUaGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 24051 0.67 0.791379
Target:  5'- uGUGCucggGCGACGCGGCcg-CGgccGCggCCg -3'
miRNA:   3'- -CACG----CGCUGCGCCGcuaGCa--CGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 24387 0.72 0.495338
Target:  5'- -cGCGC-ACGUGGCGGaCGUGCUcgaCCg -3'
miRNA:   3'- caCGCGcUGCGCCGCUaGCACGAa--GG- -5'
25520 5' -57.2 NC_005337.1 + 24498 0.66 0.850706
Target:  5'- gGUGCGCGGCGaCGcGCucGAgccCGUGCccaagCCg -3'
miRNA:   3'- -CACGCGCUGC-GC-CG--CUa--GCACGaa---GG- -5'
25520 5' -57.2 NC_005337.1 + 25108 0.72 0.524315
Target:  5'- -cGCGCGGCGCGGCGcgcgcggacgCGUGaauaUUCg -3'
miRNA:   3'- caCGCGCUGCGCCGCua--------GCACg---AAGg -5'
25520 5' -57.2 NC_005337.1 + 26084 0.69 0.675278
Target:  5'- -aGCGCGGCGCGGgGAagCGccGCcggaugUCCa -3'
miRNA:   3'- caCGCGCUGCGCCgCUa-GCa-CGa-----AGG- -5'
25520 5' -57.2 NC_005337.1 + 27925 0.66 0.850706
Target:  5'- -cGCGCGAUcUGGaCGGucauuucaUCGUGCUgcgCCg -3'
miRNA:   3'- caCGCGCUGcGCC-GCU--------AGCACGAa--GG- -5'
25520 5' -57.2 NC_005337.1 + 28496 0.71 0.573921
Target:  5'- -cGCGCGGCGC-GCGGUCGcGCggCa -3'
miRNA:   3'- caCGCGCUGCGcCGCUAGCaCGaaGg -5'
25520 5' -57.2 NC_005337.1 + 28879 0.66 0.833802
Target:  5'- -aGCGCG-CGCGaGUGGUCcGUGUUgaggaugcuggccUCCg -3'
miRNA:   3'- caCGCGCuGCGC-CGCUAG-CACGA-------------AGG- -5'
25520 5' -57.2 NC_005337.1 + 29223 0.66 0.858456
Target:  5'- -aGCGCcGCGCGGCcGggCGUcGCcugCCg -3'
miRNA:   3'- caCGCGcUGCGCCG-CuaGCA-CGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 30478 0.67 0.800345
Target:  5'- -aGCGCGA--CGGUGA-CGUGgUUCCc -3'
miRNA:   3'- caCGCGCUgcGCCGCUaGCACgAAGG- -5'
25520 5' -57.2 NC_005337.1 + 30656 0.68 0.754186
Target:  5'- -cGCGCGGCGCGGa-GUUGUGgUUg- -3'
miRNA:   3'- caCGCGCUGCGCCgcUAGCACgAAgg -5'
25520 5' -57.2 NC_005337.1 + 33605 0.72 0.534119
Target:  5'- -cGCGCGGCGCGaacGCGG-CGUGgUUCa -3'
miRNA:   3'- caCGCGCUGCGC---CGCUaGCACgAAGg -5'
25520 5' -57.2 NC_005337.1 + 34010 0.67 0.817818
Target:  5'- uUGCGCG-CGCGGUag--GUGCUcCCg -3'
miRNA:   3'- cACGCGCuGCGCCGcuagCACGAaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.