miRNA display CGI


Results 1 - 20 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 748 0.69 0.714304
Target:  5'- -aGCGCGGCGCccgcggccucgacGGCGGccaUGUGCUgcgcgCCg -3'
miRNA:   3'- caCGCGCUGCG-------------CCGCUa--GCACGAa----GG- -5'
25520 5' -57.2 NC_005337.1 + 748 0.69 0.714304
Target:  5'- -aGCGCGGCGCccgcggccucgacGGCGGccaUGUGCUgcgcgCCg -3'
miRNA:   3'- caCGCGCUGCG-------------CCGCUa--GCACGAa----GG- -5'
25520 5' -57.2 NC_005337.1 + 919 0.67 0.817818
Target:  5'- -aGCGCGGCgGCGGCGG-CGagGCggCg -3'
miRNA:   3'- caCGCGCUG-CGCCGCUaGCa-CGaaGg -5'
25520 5' -57.2 NC_005337.1 + 919 0.67 0.817818
Target:  5'- -aGCGCGGCgGCGGCGG-CGagGCggCg -3'
miRNA:   3'- caCGCGCUG-CGCCGCUaGCa-CGaaGg -5'
25520 5' -57.2 NC_005337.1 + 989 0.66 0.858456
Target:  5'- -gGCGCGGCGCgcggagGGCGggCGUcGCcuggaggCCg -3'
miRNA:   3'- caCGCGCUGCG------CCGCuaGCA-CGaa-----GG- -5'
25520 5' -57.2 NC_005337.1 + 989 0.66 0.858456
Target:  5'- -gGCGCGGCGCgcggagGGCGggCGUcGCcuggaggCCg -3'
miRNA:   3'- caCGCGCUGCG------CCGCuaGCA-CGaa-----GG- -5'
25520 5' -57.2 NC_005337.1 + 1188 0.69 0.715293
Target:  5'- gGUGCGCGAgCGCGGCacGggCGcGCaUUUCg -3'
miRNA:   3'- -CACGCGCU-GCGCCG--CuaGCaCG-AAGG- -5'
25520 5' -57.2 NC_005337.1 + 1433 0.67 0.817818
Target:  5'- cGUG-GUGuAUGcCGGCGAUCGUGCa--- -3'
miRNA:   3'- -CACgCGC-UGC-GCCGCUAGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 1567 0.7 0.602193
Target:  5'- -cGCGCGcaugGCGCGGCccaGGUUGUGCgcgacgauguugUCCa -3'
miRNA:   3'- caCGCGC----UGCGCCG---CUAGCACGa-----------AGG- -5'
25520 5' -57.2 NC_005337.1 + 1643 0.7 0.655026
Target:  5'- aUGCGCGcgccCGCGGCGA-CGaGCUUggCCg -3'
miRNA:   3'- cACGCGCu---GCGCCGCUaGCaCGAA--GG- -5'
25520 5' -57.2 NC_005337.1 + 3270 0.7 0.644869
Target:  5'- gGUGCGCGGCggccacgugcaGCGGCG-UCGUGUc--- -3'
miRNA:   3'- -CACGCGCUG-----------CGCCGCuAGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 3378 0.67 0.791379
Target:  5'- uGUGCGCGGCcaugagguGCaGCGG-CGUGUUgCCg -3'
miRNA:   3'- -CACGCGCUG--------CGcCGCUaGCACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 4582 0.73 0.470827
Target:  5'- -cGCG-GGCGCGGCGAcugcgCGUGCUggugcaggagcguguUCCu -3'
miRNA:   3'- caCGCgCUGCGCCGCUa----GCACGA---------------AGG- -5'
25520 5' -57.2 NC_005337.1 + 5907 0.66 0.84276
Target:  5'- -aGCGCGuCGCaGGCGAa-GUGgUUCUc -3'
miRNA:   3'- caCGCGCuGCG-CCGCUagCACgAAGG- -5'
25520 5' -57.2 NC_005337.1 + 6487 0.76 0.332659
Target:  5'- -cGCGCgGACGaggaGGuCGAUCGgcgGCUUCCg -3'
miRNA:   3'- caCGCG-CUGCg---CC-GCUAGCa--CGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 7847 0.66 0.826309
Target:  5'- gGUGCGCGggaGCGUGGaguccaGGUCGgccGCcuuUUCCa -3'
miRNA:   3'- -CACGCGC---UGCGCCg-----CUAGCa--CG---AAGG- -5'
25520 5' -57.2 NC_005337.1 + 8006 0.68 0.763666
Target:  5'- cGUGCGUGGCuaucGCGGCG-UCGcucaGCaggUCCa -3'
miRNA:   3'- -CACGCGCUG----CGCCGCuAGCa---CGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 9931 0.67 0.809161
Target:  5'- -aGCGCGGCcuGauGCGAUCGcGCcgcgUCCa -3'
miRNA:   3'- caCGCGCUG--CgcCGCUAGCaCGa---AGG- -5'
25520 5' -57.2 NC_005337.1 + 10439 0.71 0.563894
Target:  5'- cUGCGCGGCgGUGcGCGcGUCGUGCg-CCa -3'
miRNA:   3'- cACGCGCUG-CGC-CGC-UAGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 10673 0.66 0.84276
Target:  5'- --cCGCGAgCGCGGCa--CGUGCggCCg -3'
miRNA:   3'- cacGCGCU-GCGCCGcuaGCACGaaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.