miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 123377 1.12 0.001252
Target:  5'- cGUGCGCGACGCGGCGAUCGUGCUUCCa -3'
miRNA:   3'- -CACGCGCUGCGCCGCUAGCACGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 80274 0.89 0.049198
Target:  5'- cGUGCGCGACGCGGUGAUCcggcucacaaacgcGUGCgggUCCa -3'
miRNA:   3'- -CACGCGCUGCGCCGCUAG--------------CACGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 127888 0.83 0.115919
Target:  5'- -cGCGCGGCGcCGGCGAgcgCGUGCgggCCg -3'
miRNA:   3'- caCGCGCUGC-GCCGCUa--GCACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 80150 0.8 0.174482
Target:  5'- -cGCGCGGCGCGGCcGUCGcGCU-CCa -3'
miRNA:   3'- caCGCGCUGCGCCGcUAGCaCGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 6487 0.76 0.332659
Target:  5'- -cGCGCgGACGaggaGGuCGAUCGgcgGCUUCCg -3'
miRNA:   3'- caCGCG-CUGCg---CC-GCUAGCa--CGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 109465 0.76 0.340181
Target:  5'- cGUGUGCGuGCGCGcGUGggCGcGCUUCCg -3'
miRNA:   3'- -CACGCGC-UGCGC-CGCuaGCaCGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 42625 0.75 0.379619
Target:  5'- aUGUGCGGCaccGCGGUGGUCGacgGCUgcUCCg -3'
miRNA:   3'- cACGCGCUG---CGCCGCUAGCa--CGA--AGG- -5'
25520 5' -57.2 NC_005337.1 + 106560 0.74 0.396228
Target:  5'- -aGCGCGcUGCGGgaGAUCGUGCagCCg -3'
miRNA:   3'- caCGCGCuGCGCCg-CUAGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 69251 0.74 0.422003
Target:  5'- cGUGCcgGUGACGCuGGUGGUgG-GCUUCCa -3'
miRNA:   3'- -CACG--CGCUGCG-CCGCUAgCaCGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 102416 0.73 0.439736
Target:  5'- -aGCGCGACGCGGUGGacauggaGUGgUUCUc -3'
miRNA:   3'- caCGCGCUGCGCCGCUag-----CACgAAGG- -5'
25520 5' -57.2 NC_005337.1 + 122388 0.73 0.457887
Target:  5'- cGUGCGCGaggucgugcuGCGCGGCGGcgCGcgGCgccugUCCg -3'
miRNA:   3'- -CACGCGC----------UGCGCCGCUa-GCa-CGa----AGG- -5'
25520 5' -57.2 NC_005337.1 + 38519 0.73 0.457887
Target:  5'- -cGcCGCGAuCGCGGgGAUCGUGCa--- -3'
miRNA:   3'- caC-GCGCU-GCGCCgCUAGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 97069 0.73 0.467111
Target:  5'- -cGCGCGgcGCGCGGUGGUC-UGCgugCCc -3'
miRNA:   3'- caCGCGC--UGCGCCGCUAGcACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 71279 0.73 0.467111
Target:  5'- aUGCGCcGCGUGGCGcUgGUgcGCUUCCg -3'
miRNA:   3'- cACGCGcUGCGCCGCuAgCA--CGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 35892 0.73 0.467111
Target:  5'- uGUGCGCgGACGCGuacGCGAgCGUGUUUUUa -3'
miRNA:   3'- -CACGCG-CUGCGC---CGCUaGCACGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 4582 0.73 0.470827
Target:  5'- -cGCG-GGCGCGGCGAcugcgCGUGCUggugcaggagcguguUCCu -3'
miRNA:   3'- caCGCgCUGCGCCGCUa----GCACGA---------------AGG- -5'
25520 5' -57.2 NC_005337.1 + 106041 0.73 0.47643
Target:  5'- -cGCGCGACGgcguuuCGGUGAUCGUGUa--- -3'
miRNA:   3'- caCGCGCUGC------GCCGCUAGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 23064 0.73 0.48584
Target:  5'- -cGCGCGccggaACGCGGCGGcCGUGC--CCg -3'
miRNA:   3'- caCGCGC-----UGCGCCGCUaGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 84901 0.73 0.48584
Target:  5'- -gGgGCGGUGCGGCGGUCGccGCcUCCg -3'
miRNA:   3'- caCgCGCUGCGCCGCUAGCa-CGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 24387 0.72 0.495338
Target:  5'- -cGCGC-ACGUGGCGGaCGUGCUcgaCCg -3'
miRNA:   3'- caCGCGcUGCGCCGCUaGCACGAa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.