miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 67925 0.66 0.834625
Target:  5'- -aGUGC--CGCGGUGGUCGcGCU-CCa -3'
miRNA:   3'- caCGCGcuGCGCCGCUAGCaCGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 91214 0.66 0.84276
Target:  5'- -gGCGCGcCGcCGGUGGUCa-GCgcgUCCa -3'
miRNA:   3'- caCGCGCuGC-GCCGCUAGcaCGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 39939 0.66 0.858456
Target:  5'- cGUGCGCGGCG-GGCGccUCGcGCg--- -3'
miRNA:   3'- -CACGCGCUGCgCCGCu-AGCaCGaagg -5'
25520 5' -57.2 NC_005337.1 + 96884 0.66 0.84276
Target:  5'- aUGCGCGGCGUGGaCG-UCG-GCg--- -3'
miRNA:   3'- cACGCGCUGCGCC-GCuAGCaCGaagg -5'
25520 5' -57.2 NC_005337.1 + 27925 0.66 0.850706
Target:  5'- -cGCGCGAUcUGGaCGGucauuucaUCGUGCUgcgCCg -3'
miRNA:   3'- caCGCGCUGcGCC-GCU--------AGCACGAa--GG- -5'
25520 5' -57.2 NC_005337.1 + 38476 0.66 0.84276
Target:  5'- gGUGCGCGccggGCGCGcGCG-UCGccgaGCUggCCg -3'
miRNA:   3'- -CACGCGC----UGCGC-CGCuAGCa---CGAa-GG- -5'
25520 5' -57.2 NC_005337.1 + 989 0.66 0.858456
Target:  5'- -gGCGCGGCGCgcggagGGCGggCGUcGCcuggaggCCg -3'
miRNA:   3'- caCGCGCUGCG------CCGCuaGCA-CGaa-----GG- -5'
25520 5' -57.2 NC_005337.1 + 44519 0.66 0.850706
Target:  5'- -cGCGCu-CGCGGCGGagcuccUCG-GCUaCCg -3'
miRNA:   3'- caCGCGcuGCGCCGCU------AGCaCGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 77639 0.66 0.834625
Target:  5'- aGUGCGUGACGUaGaGCGcGUCGUagacGCggCCg -3'
miRNA:   3'- -CACGCGCUGCG-C-CGC-UAGCA----CGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 100701 0.66 0.834625
Target:  5'- -cGaCGCGACGCGGCGc-CGcGCUcUCg -3'
miRNA:   3'- caC-GCGCUGCGCCGCuaGCaCGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 50409 0.66 0.856922
Target:  5'- -cGCGCGucggugacggaGCGGCGGgc--GCUUCCg -3'
miRNA:   3'- caCGCGCug---------CGCCGCUagcaCGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 61094 0.66 0.866004
Target:  5'- -gGCGaCGAgGCGGUGGUaGUGCgcguugagcUCCu -3'
miRNA:   3'- caCGC-GCUgCGCCGCUAgCACGa--------AGG- -5'
25520 5' -57.2 NC_005337.1 + 5907 0.66 0.84276
Target:  5'- -aGCGCGuCGCaGGCGAa-GUGgUUCUc -3'
miRNA:   3'- caCGCGCuGCG-CCGCUagCACgAAGG- -5'
25520 5' -57.2 NC_005337.1 + 7847 0.66 0.826309
Target:  5'- gGUGCGCGggaGCGUGGaguccaGGUCGgccGCcuuUUCCa -3'
miRNA:   3'- -CACGCGC---UGCGCCg-----CUAGCa--CG---AAGG- -5'
25520 5' -57.2 NC_005337.1 + 96835 0.66 0.833802
Target:  5'- gGUGCGCaGcCGCGGCGuggCGUucccccgGCU-CCg -3'
miRNA:   3'- -CACGCG-CuGCGCCGCua-GCA-------CGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 28879 0.66 0.833802
Target:  5'- -aGCGCG-CGCGaGUGGUCcGUGUUgaggaugcuggccUCCg -3'
miRNA:   3'- caCGCGCuGCGC-CGCUAG-CACGA-------------AGG- -5'
25520 5' -57.2 NC_005337.1 + 67281 0.66 0.866004
Target:  5'- -aGCGCGACuugaGCcccgcguugaGGCGGUUGUaGCggUCCa -3'
miRNA:   3'- caCGCGCUG----CG----------CCGCUAGCA-CGa-AGG- -5'
25520 5' -57.2 NC_005337.1 + 47968 0.66 0.850706
Target:  5'- -cGCGCGAgUGCGGCG--CGgacGCgUCCa -3'
miRNA:   3'- caCGCGCU-GCGCCGCuaGCa--CGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 91447 0.66 0.84276
Target:  5'- gGUGUccaccuGCGGCGUcugGGCGAgcacgauccCGUGCUUCg -3'
miRNA:   3'- -CACG------CGCUGCG---CCGCUa--------GCACGAAGg -5'
25520 5' -57.2 NC_005337.1 + 29223 0.66 0.858456
Target:  5'- -aGCGCcGCGCGGCcGggCGUcGCcugCCg -3'
miRNA:   3'- caCGCGcUGCGCCG-CuaGCA-CGaa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.