miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 93286 0.7 0.624533
Target:  5'- gGUGCGuCGGCGCcugguGGCGGUCGaGCUa-- -3'
miRNA:   3'- -CACGC-GCUGCG-----CCGCUAGCaCGAagg -5'
25520 5' -57.2 NC_005337.1 + 49455 0.72 0.543987
Target:  5'- cGUGCGCGAUGCuGGCGu---UGCUggCCg -3'
miRNA:   3'- -CACGCGCUGCG-CCGCuagcACGAa-GG- -5'
25520 5' -57.2 NC_005337.1 + 13763 0.71 0.553914
Target:  5'- -cGCGCGcccgaACGCGGCGAggggcgccaggUCGUaGCUcgugUCCg -3'
miRNA:   3'- caCGCGC-----UGCGCCGCU-----------AGCA-CGA----AGG- -5'
25520 5' -57.2 NC_005337.1 + 99408 0.71 0.563894
Target:  5'- cUGCGCaccgcGgGCGGCGGgugCGUGCUgagCCg -3'
miRNA:   3'- cACGCGc----UgCGCCGCUa--GCACGAa--GG- -5'
25520 5' -57.2 NC_005337.1 + 10439 0.71 0.563894
Target:  5'- cUGCGCGGCgGUGcGCGcGUCGUGCg-CCa -3'
miRNA:   3'- cACGCGCUG-CGC-CGC-UAGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 56264 0.71 0.563894
Target:  5'- -gGC-CGACGCGGUGGagUCGcUGCUgUCCa -3'
miRNA:   3'- caCGcGCUGCGCCGCU--AGC-ACGA-AGG- -5'
25520 5' -57.2 NC_005337.1 + 28496 0.71 0.573921
Target:  5'- -cGCGCGGCGC-GCGGUCGcGCggCa -3'
miRNA:   3'- caCGCGCUGCGcCGCUAGCaCGaaGg -5'
25520 5' -57.2 NC_005337.1 + 1567 0.7 0.602193
Target:  5'- -cGCGCGcaugGCGCGGCccaGGUUGUGCgcgacgauguugUCCa -3'
miRNA:   3'- caCGCGC----UGCGCCG---CUAGCACGa-----------AGG- -5'
25520 5' -57.2 NC_005337.1 + 99296 0.7 0.60422
Target:  5'- -gGCGCGGCGCGGCGuUCc-GCagcgCCg -3'
miRNA:   3'- caCGCGCUGCGCCGCuAGcaCGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 119333 0.72 0.531171
Target:  5'- aUGCGCGGCGaCGGUGGacacagCGgccaccacgagagcUGCUUCCa -3'
miRNA:   3'- cACGCGCUGC-GCCGCUa-----GC--------------ACGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 48944 0.72 0.51458
Target:  5'- -gGCGUGAagGCGGUGAUggaCGUGCUggCCa -3'
miRNA:   3'- caCGCGCUg-CGCCGCUA---GCACGAa-GG- -5'
25520 5' -57.2 NC_005337.1 + 23064 0.73 0.48584
Target:  5'- -cGCGCGccggaACGCGGCGGcCGUGC--CCg -3'
miRNA:   3'- caCGCGC-----UGCGCCGCUaGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 6487 0.76 0.332659
Target:  5'- -cGCGCgGACGaggaGGuCGAUCGgcgGCUUCCg -3'
miRNA:   3'- caCGCG-CUGCg---CC-GCUAGCa--CGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 42625 0.75 0.379619
Target:  5'- aUGUGCGGCaccGCGGUGGUCGacgGCUgcUCCg -3'
miRNA:   3'- cACGCGCUG---CGCCGCUAGCa--CGA--AGG- -5'
25520 5' -57.2 NC_005337.1 + 69251 0.74 0.422003
Target:  5'- cGUGCcgGUGACGCuGGUGGUgG-GCUUCCa -3'
miRNA:   3'- -CACG--CGCUGCG-CCGCUAgCaCGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 38519 0.73 0.457887
Target:  5'- -cGcCGCGAuCGCGGgGAUCGUGCa--- -3'
miRNA:   3'- caC-GCGCU-GCGCCgCUAGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 122388 0.73 0.457887
Target:  5'- cGUGCGCGaggucgugcuGCGCGGCGGcgCGcgGCgccugUCCg -3'
miRNA:   3'- -CACGCGC----------UGCGCCGCUa-GCa-CGa----AGG- -5'
25520 5' -57.2 NC_005337.1 + 71279 0.73 0.467111
Target:  5'- aUGCGCcGCGUGGCGcUgGUgcGCUUCCg -3'
miRNA:   3'- cACGCGcUGCGCCGCuAgCA--CGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 97069 0.73 0.467111
Target:  5'- -cGCGCGgcGCGCGGUGGUC-UGCgugCCc -3'
miRNA:   3'- caCGCGC--UGCGCCGCUAGcACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 84901 0.73 0.48584
Target:  5'- -gGgGCGGUGCGGCGGUCGccGCcUCCg -3'
miRNA:   3'- caCgCGCUGCGCCGCUAGCa-CGaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.