miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 123377 1.12 0.001252
Target:  5'- cGUGCGCGACGCGGCGAUCGUGCUUCCa -3'
miRNA:   3'- -CACGCGCUGCGCCGCUAGCACGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 39486 0.71 0.573921
Target:  5'- -cGCGCGACGCGcGCGcgC-UGCUgCUg -3'
miRNA:   3'- caCGCGCUGCGC-CGCuaGcACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 105790 0.71 0.573921
Target:  5'- -cGCGCGccGCGCGGcCGcAUCcGUGCU-CCa -3'
miRNA:   3'- caCGCGC--UGCGCC-GC-UAG-CACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 67281 0.66 0.866004
Target:  5'- -aGCGCGACuugaGCcccgcguugaGGCGGUUGUaGCggUCCa -3'
miRNA:   3'- caCGCGCUG----CG----------CCGCUAGCA-CGa-AGG- -5'
25520 5' -57.2 NC_005337.1 + 106560 0.74 0.396228
Target:  5'- -aGCGCGcUGCGGgaGAUCGUGCagCCg -3'
miRNA:   3'- caCGCGCuGCGCCg-CUAGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 102416 0.73 0.439736
Target:  5'- -aGCGCGACGCGGUGGacauggaGUGgUUCUc -3'
miRNA:   3'- caCGCGCUGCGCCGCUag-----CACgAAGG- -5'
25520 5' -57.2 NC_005337.1 + 4582 0.73 0.470827
Target:  5'- -cGCG-GGCGCGGCGAcugcgCGUGCUggugcaggagcguguUCCu -3'
miRNA:   3'- caCGCgCUGCGCCGCUa----GCACGA---------------AGG- -5'
25520 5' -57.2 NC_005337.1 + 106041 0.73 0.47643
Target:  5'- -cGCGCGACGgcguuuCGGUGAUCGUGUa--- -3'
miRNA:   3'- caCGCGCUGC------GCCGCUAGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 104304 0.72 0.50492
Target:  5'- -cGCGagGGCGCGGCGGcgcucugCGUGCgUCCc -3'
miRNA:   3'- caCGCg-CUGCGCCGCUa------GCACGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 111724 0.71 0.563894
Target:  5'- -cGCGCGucCGCGGUGAagGU-CUUCCc -3'
miRNA:   3'- caCGCGCu-GCGCCGCUagCAcGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 25108 0.72 0.524315
Target:  5'- -cGCGCGGCGCGGCGcgcgcggacgCGUGaauaUUCg -3'
miRNA:   3'- caCGCGCUGCGCCGCua--------GCACg---AAGg -5'
25520 5' -57.2 NC_005337.1 + 40679 0.72 0.495338
Target:  5'- -gGCGCGGCGaCGGCGGUaucuCUUCCu -3'
miRNA:   3'- caCGCGCUGC-GCCGCUAgcacGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 80274 0.89 0.049198
Target:  5'- cGUGCGCGACGCGGUGAUCcggcucacaaacgcGUGCgggUCCa -3'
miRNA:   3'- -CACGCGCUGCGCCGCUAG--------------CACGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 33605 0.72 0.534119
Target:  5'- -cGCGCGGCGCGaacGCGG-CGUGgUUCa -3'
miRNA:   3'- caCGCGCUGCGC---CGCUaGCACgAAGg -5'
25520 5' -57.2 NC_005337.1 + 127888 0.83 0.115919
Target:  5'- -cGCGCGGCGcCGGCGAgcgCGUGCgggCCg -3'
miRNA:   3'- caCGCGCUGC-GCCGCUa--GCACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 24387 0.72 0.495338
Target:  5'- -cGCGC-ACGUGGCGGaCGUGCUcgaCCg -3'
miRNA:   3'- caCGCGcUGCGCCGCUaGCACGAa--GG- -5'
25520 5' -57.2 NC_005337.1 + 67524 0.71 0.553914
Target:  5'- -cGCGCG-UGCGGCGGUUGgugaaguaggGCgugUCCg -3'
miRNA:   3'- caCGCGCuGCGCCGCUAGCa---------CGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 45945 0.71 0.573921
Target:  5'- -cGCGCG-CGcCGGCGcgCGUGgCgUCCa -3'
miRNA:   3'- caCGCGCuGC-GCCGCuaGCAC-GaAGG- -5'
25520 5' -57.2 NC_005337.1 + 109465 0.76 0.340181
Target:  5'- cGUGUGCGuGCGCGcGUGggCGcGCUUCCg -3'
miRNA:   3'- -CACGCGC-UGCGC-CGCuaGCaCGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 35892 0.73 0.467111
Target:  5'- uGUGCGCgGACGCGuacGCGAgCGUGUUUUUa -3'
miRNA:   3'- -CACGCG-CUGCGC---CGCUaGCACGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.