miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 40679 0.72 0.495338
Target:  5'- -gGCGCGGCGaCGGCGGUaucuCUUCCu -3'
miRNA:   3'- caCGCGCUGC-GCCGCUAgcacGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 104304 0.72 0.50492
Target:  5'- -cGCGagGGCGCGGCGGcgcucugCGUGCgUCCc -3'
miRNA:   3'- caCGCg-CUGCGCCGCUa------GCACGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 48944 0.72 0.51458
Target:  5'- -gGCGUGAagGCGGUGAUggaCGUGCUggCCa -3'
miRNA:   3'- caCGCGCUg-CGCCGCUA---GCACGAa-GG- -5'
25520 5' -57.2 NC_005337.1 + 25108 0.72 0.524315
Target:  5'- -cGCGCGGCGCGGCGcgcgcggacgCGUGaauaUUCg -3'
miRNA:   3'- caCGCGCUGCGCCGCua--------GCACg---AAGg -5'
25520 5' -57.2 NC_005337.1 + 113163 0.72 0.524315
Target:  5'- gGUGCGCuGCGUGGCGGcCG-GCgUCCc -3'
miRNA:   3'- -CACGCGcUGCGCCGCUaGCaCGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 119333 0.72 0.531171
Target:  5'- aUGCGCGGCGaCGGUGGacacagCGgccaccacgagagcUGCUUCCa -3'
miRNA:   3'- cACGCGCUGC-GCCGCUa-----GC--------------ACGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 33605 0.72 0.534119
Target:  5'- -cGCGCGGCGCGaacGCGG-CGUGgUUCa -3'
miRNA:   3'- caCGCGCUGCGC---CGCUaGCACgAAGg -5'
25520 5' -57.2 NC_005337.1 + 49455 0.72 0.543987
Target:  5'- cGUGCGCGAUGCuGGCGu---UGCUggCCg -3'
miRNA:   3'- -CACGCGCUGCG-CCGCuagcACGAa-GG- -5'
25520 5' -57.2 NC_005337.1 + 13763 0.71 0.553914
Target:  5'- -cGCGCGcccgaACGCGGCGAggggcgccaggUCGUaGCUcgugUCCg -3'
miRNA:   3'- caCGCGC-----UGCGCCGCU-----------AGCA-CGA----AGG- -5'
25520 5' -57.2 NC_005337.1 + 67524 0.71 0.553914
Target:  5'- -cGCGCG-UGCGGCGGUUGgugaaguaggGCgugUCCg -3'
miRNA:   3'- caCGCGCuGCGCCGCUAGCa---------CGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 111724 0.71 0.563894
Target:  5'- -cGCGCGucCGCGGUGAagGU-CUUCCc -3'
miRNA:   3'- caCGCGCu-GCGCCGCUagCAcGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 99408 0.71 0.563894
Target:  5'- cUGCGCaccgcGgGCGGCGGgugCGUGCUgagCCg -3'
miRNA:   3'- cACGCGc----UgCGCCGCUa--GCACGAa--GG- -5'
25520 5' -57.2 NC_005337.1 + 10439 0.71 0.563894
Target:  5'- cUGCGCGGCgGUGcGCGcGUCGUGCg-CCa -3'
miRNA:   3'- cACGCGCUG-CGC-CGC-UAGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 56264 0.71 0.563894
Target:  5'- -gGC-CGACGCGGUGGagUCGcUGCUgUCCa -3'
miRNA:   3'- caCGcGCUGCGCCGCU--AGC-ACGA-AGG- -5'
25520 5' -57.2 NC_005337.1 + 28496 0.71 0.573921
Target:  5'- -cGCGCGGCGC-GCGGUCGcGCggCa -3'
miRNA:   3'- caCGCGCUGCGcCGCUAGCaCGaaGg -5'
25520 5' -57.2 NC_005337.1 + 105790 0.71 0.573921
Target:  5'- -cGCGCGccGCGCGGcCGcAUCcGUGCU-CCa -3'
miRNA:   3'- caCGCGC--UGCGCC-GC-UAG-CACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 39486 0.71 0.573921
Target:  5'- -cGCGCGACGCGcGCGcgC-UGCUgCUg -3'
miRNA:   3'- caCGCGCUGCGC-CGCuaGcACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 45945 0.71 0.573921
Target:  5'- -cGCGCG-CGcCGGCGcgCGUGgCgUCCa -3'
miRNA:   3'- caCGCGCuGC-GCCGCuaGCAC-GaAGG- -5'
25520 5' -57.2 NC_005337.1 + 95007 0.71 0.583989
Target:  5'- uUGCGCGACaGCGGCGGcUGcUGCgcgUUCu -3'
miRNA:   3'- cACGCGCUG-CGCCGCUaGC-ACGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 92053 0.71 0.594091
Target:  5'- cGUGCGCGAacuCGCGGaCGAcCG-GCUguaCCg -3'
miRNA:   3'- -CACGCGCU---GCGCC-GCUaGCaCGAa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.