Results 21 - 40 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25520 | 5' | -57.2 | NC_005337.1 | + | 27925 | 0.66 | 0.850706 |
Target: 5'- -cGCGCGAUcUGGaCGGucauuucaUCGUGCUgcgCCg -3' miRNA: 3'- caCGCGCUGcGCC-GCU--------AGCACGAa--GG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 58243 | 0.66 | 0.850706 |
Target: 5'- -aGCGCaaguccGGCGCGGCGGUC----UUCCg -3' miRNA: 3'- caCGCG------CUGCGCCGCUAGcacgAAGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 24498 | 0.66 | 0.850706 |
Target: 5'- gGUGCGCGGCGaCGcGCucGAgccCGUGCccaagCCg -3' miRNA: 3'- -CACGCGCUGC-GC-CG--CUa--GCACGaa---GG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 91214 | 0.66 | 0.84276 |
Target: 5'- -gGCGCGcCGcCGGUGGUCa-GCgcgUCCa -3' miRNA: 3'- caCGCGCuGC-GCCGCUAGcaCGa--AGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 96884 | 0.66 | 0.84276 |
Target: 5'- aUGCGCGGCGUGGaCG-UCG-GCg--- -3' miRNA: 3'- cACGCGCUGCGCC-GCuAGCaCGaagg -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 5907 | 0.66 | 0.84276 |
Target: 5'- -aGCGCGuCGCaGGCGAa-GUGgUUCUc -3' miRNA: 3'- caCGCGCuGCG-CCGCUagCACgAAGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 38476 | 0.66 | 0.84276 |
Target: 5'- gGUGCGCGccggGCGCGcGCG-UCGccgaGCUggCCg -3' miRNA: 3'- -CACGCGC----UGCGC-CGCuAGCa---CGAa-GG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 91447 | 0.66 | 0.84276 |
Target: 5'- gGUGUccaccuGCGGCGUcugGGCGAgcacgauccCGUGCUUCg -3' miRNA: 3'- -CACG------CGCUGCG---CCGCUa--------GCACGAAGg -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 10673 | 0.66 | 0.84276 |
Target: 5'- --cCGCGAgCGCGGCa--CGUGCggCCg -3' miRNA: 3'- cacGCGCU-GCGCCGcuaGCACGaaGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 100399 | 0.66 | 0.84276 |
Target: 5'- aGUGCGCgGGCGCGcGCuacgaGAUCGacGCgcgCCa -3' miRNA: 3'- -CACGCG-CUGCGC-CG-----CUAGCa-CGaa-GG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 115146 | 0.66 | 0.84276 |
Target: 5'- -cGCGCGugGCGGaGG-CcUGCgUCCg -3' miRNA: 3'- caCGCGCugCGCCgCUaGcACGaAGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 100701 | 0.66 | 0.834625 |
Target: 5'- -cGaCGCGACGCGGCGc-CGcGCUcUCg -3' miRNA: 3'- caC-GCGCUGCGCCGCuaGCaCGAaGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 77639 | 0.66 | 0.834625 |
Target: 5'- aGUGCGUGACGUaGaGCGcGUCGUagacGCggCCg -3' miRNA: 3'- -CACGCGCUGCG-C-CGC-UAGCA----CGaaGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 67925 | 0.66 | 0.834625 |
Target: 5'- -aGUGC--CGCGGUGGUCGcGCU-CCa -3' miRNA: 3'- caCGCGcuGCGCCGCUAGCaCGAaGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 28879 | 0.66 | 0.833802 |
Target: 5'- -aGCGCG-CGCGaGUGGUCcGUGUUgaggaugcuggccUCCg -3' miRNA: 3'- caCGCGCuGCGC-CGCUAG-CACGA-------------AGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 96835 | 0.66 | 0.833802 |
Target: 5'- gGUGCGCaGcCGCGGCGuggCGUucccccgGCU-CCg -3' miRNA: 3'- -CACGCG-CuGCGCCGCua-GCA-------CGAaGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 130536 | 0.66 | 0.829657 |
Target: 5'- gGUGCGCGcgggcgccaacgucaACGaCGG-GAUCG-GCUUCa -3' miRNA: 3'- -CACGCGC---------------UGC-GCCgCUAGCaCGAAGg -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 7847 | 0.66 | 0.826309 |
Target: 5'- gGUGCGCGggaGCGUGGaguccaGGUCGgccGCcuuUUCCa -3' miRNA: 3'- -CACGCGC---UGCGCCg-----CUAGCa--CG---AAGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 89943 | 0.66 | 0.826309 |
Target: 5'- -aGCGCGGCGUugauggcgucGGCGAucUCGuUGCUgcUCa -3' miRNA: 3'- caCGCGCUGCG----------CCGCU--AGC-ACGA--AGg -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 40540 | 0.67 | 0.817818 |
Target: 5'- -cGcCGCGGCGC-GCGGUgGUGCggUUCu -3' miRNA: 3'- caC-GCGCUGCGcCGCUAgCACGa-AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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