miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 52576 0.67 0.817818
Target:  5'- -cGCGgggaCGGCGCGGCGG-CGcugGCggCCa -3'
miRNA:   3'- caCGC----GCUGCGCCGCUaGCa--CGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 34010 0.67 0.817818
Target:  5'- uUGCGCG-CGCGGUag--GUGCUcCCg -3'
miRNA:   3'- cACGCGCuGCGCCGcuagCACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 919 0.67 0.817818
Target:  5'- -aGCGCGGCgGCGGCGG-CGagGCggCg -3'
miRNA:   3'- caCGCGCUG-CGCCGCUaGCa-CGaaGg -5'
25520 5' -57.2 NC_005337.1 + 40540 0.67 0.817818
Target:  5'- -cGcCGCGGCGC-GCGGUgGUGCggUUCu -3'
miRNA:   3'- caC-GCGCUGCGcCGCUAgCACGa-AGG- -5'
25520 5' -57.2 NC_005337.1 + 1433 0.67 0.817818
Target:  5'- cGUG-GUGuAUGcCGGCGAUCGUGCa--- -3'
miRNA:   3'- -CACgCGC-UGC-GCCGCUAGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 85888 0.67 0.809161
Target:  5'- cGUGCGCGgcucgaagGCGCGGCuGA-CGUuCUcgUCCa -3'
miRNA:   3'- -CACGCGC--------UGCGCCG-CUaGCAcGA--AGG- -5'
25520 5' -57.2 NC_005337.1 + 9931 0.67 0.809161
Target:  5'- -aGCGCGGCcuGauGCGAUCGcGCcgcgUCCa -3'
miRNA:   3'- caCGCGCUG--CgcCGCUAGCaCGa---AGG- -5'
25520 5' -57.2 NC_005337.1 + 44789 0.67 0.809161
Target:  5'- uUGCGCGACGUGcGCaacAUC-UGCUgCCg -3'
miRNA:   3'- cACGCGCUGCGC-CGc--UAGcACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 36772 0.67 0.809161
Target:  5'- gGUGUGC-ACGCGGaccUCGUGCgacCCg -3'
miRNA:   3'- -CACGCGcUGCGCCgcuAGCACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 83884 0.67 0.809161
Target:  5'- -cGCGCGGCGCgcccccgcgccaGGCGccCGUGC--CCg -3'
miRNA:   3'- caCGCGCUGCG------------CCGCuaGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 130176 0.67 0.809161
Target:  5'- -cGCGCG-CGCGGUGAggaCGcUGCUg-- -3'
miRNA:   3'- caCGCGCuGCGCCGCUa--GC-ACGAagg -5'
25520 5' -57.2 NC_005337.1 + 131376 0.67 0.809161
Target:  5'- -cGCGCGGuacgucuucgacCGCGGggccgUGAUCGUGUUcCCg -3'
miRNA:   3'- caCGCGCU------------GCGCC-----GCUAGCACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 43883 0.67 0.808287
Target:  5'- cGUGCGCGACGCgcacacguaccacGGCcAUCucaGUGCcgggcUCCg -3'
miRNA:   3'- -CACGCGCUGCG-------------CCGcUAG---CACGa----AGG- -5'
25520 5' -57.2 NC_005337.1 + 15336 0.67 0.800345
Target:  5'- -cGCGCGACGCacgcuGCGcccgCGcgacGCUUCCa -3'
miRNA:   3'- caCGCGCUGCGc----CGCua--GCa---CGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 56137 0.67 0.800345
Target:  5'- cGUGCGCGGCGUGcaGCGGggCG-GCaaggCCg -3'
miRNA:   3'- -CACGCGCUGCGC--CGCUa-GCaCGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 129534 0.67 0.800345
Target:  5'- -cGCGCGGCGCGaGCGucCGUGa-UCUc -3'
miRNA:   3'- caCGCGCUGCGC-CGCuaGCACgaAGG- -5'
25520 5' -57.2 NC_005337.1 + 44852 0.67 0.800345
Target:  5'- -cGCGCGGCGauGCGucCGUGCUa-- -3'
miRNA:   3'- caCGCGCUGCgcCGCuaGCACGAagg -5'
25520 5' -57.2 NC_005337.1 + 30478 0.67 0.800345
Target:  5'- -aGCGCGA--CGGUGA-CGUGgUUCCc -3'
miRNA:   3'- caCGCGCUgcGCCGCUaGCACgAAGG- -5'
25520 5' -57.2 NC_005337.1 + 80373 0.67 0.800345
Target:  5'- -cGCGcCGGuCGCGGaccCGGUCGUGUggcugCCg -3'
miRNA:   3'- caCGC-GCU-GCGCC---GCUAGCACGaa---GG- -5'
25520 5' -57.2 NC_005337.1 + 96100 0.67 0.800345
Target:  5'- -cGCG-GGCGCGGCGGagGacaUGCggCCg -3'
miRNA:   3'- caCGCgCUGCGCCGCUagC---ACGaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.