miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 132120 0.68 0.753232
Target:  5'- cGUGCGCGGCaggcuccgcaacuGCGaGCuGGUgGUGCUgaaCCg -3'
miRNA:   3'- -CACGCGCUG-------------CGC-CG-CUAgCACGAa--GG- -5'
25520 5' -57.2 NC_005337.1 + 131376 0.67 0.809161
Target:  5'- -cGCGCGGuacgucuucgacCGCGGggccgUGAUCGUGUUcCCg -3'
miRNA:   3'- caCGCGCU------------GCGCC-----GCUAGCACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 130536 0.66 0.829657
Target:  5'- gGUGCGCGcgggcgccaacgucaACGaCGG-GAUCG-GCUUCa -3'
miRNA:   3'- -CACGCGC---------------UGC-GCCgCUAGCaCGAAGg -5'
25520 5' -57.2 NC_005337.1 + 130176 0.67 0.809161
Target:  5'- -cGCGCG-CGCGGUGAggaCGcUGCUg-- -3'
miRNA:   3'- caCGCGCuGCGCCGCUa--GC-ACGAagg -5'
25520 5' -57.2 NC_005337.1 + 130146 0.68 0.763666
Target:  5'- -cGCGCG-CGCuGGCGcUCGcgcGCUUUCg -3'
miRNA:   3'- caCGCGCuGCG-CCGCuAGCa--CGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 129534 0.67 0.800345
Target:  5'- -cGCGCGGCGCGaGCGucCGUGa-UCUc -3'
miRNA:   3'- caCGCGCUGCGC-CGCuaGCACgaAGG- -5'
25520 5' -57.2 NC_005337.1 + 128322 0.69 0.675278
Target:  5'- -cGCGCGGCGCGaGCGcgacUGCUcggUCCa -3'
miRNA:   3'- caCGCGCUGCGC-CGCuagcACGA---AGG- -5'
25520 5' -57.2 NC_005337.1 + 127888 0.83 0.115919
Target:  5'- -cGCGCGGCGcCGGCGAgcgCGUGCgggCCg -3'
miRNA:   3'- caCGCGCUGC-GCCGCUa--GCACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 126959 0.66 0.858456
Target:  5'- -cGCGCGACGUGuGCGGguacaCGccacugcacUGCUacgUCCa -3'
miRNA:   3'- caCGCGCUGCGC-CGCUa----GC---------ACGA---AGG- -5'
25520 5' -57.2 NC_005337.1 + 126425 0.7 0.634702
Target:  5'- -gGCGCG-CGaCGGCGcgCGUGCgcguguaCCa -3'
miRNA:   3'- caCGCGCuGC-GCCGCuaGCACGaa-----GG- -5'
25520 5' -57.2 NC_005337.1 + 123931 0.68 0.754186
Target:  5'- cUGCgGCGGCGaCGGCcg-CGUGCagcUCCa -3'
miRNA:   3'- cACG-CGCUGC-GCCGcuaGCACGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 123647 0.69 0.715293
Target:  5'- cUGCaGCGGCGCGaCGGUCGUcCUggcgCCg -3'
miRNA:   3'- cACG-CGCUGCGCcGCUAGCAcGAa---GG- -5'
25520 5' -57.2 NC_005337.1 + 123377 1.12 0.001252
Target:  5'- cGUGCGCGACGCGGCGAUCGUGCUUCCa -3'
miRNA:   3'- -CACGCGCUGCGCCGCUAGCACGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 122468 0.68 0.754186
Target:  5'- aGUGCGaggcaGAgGUGGCGGUCaugGCgaccgUCCg -3'
miRNA:   3'- -CACGCg----CUgCGCCGCUAGca-CGa----AGG- -5'
25520 5' -57.2 NC_005337.1 + 122388 0.73 0.457887
Target:  5'- cGUGCGCGaggucgugcuGCGCGGCGGcgCGcgGCgccugUCCg -3'
miRNA:   3'- -CACGCGC----------UGCGCCGCUa-GCa-CGa----AGG- -5'
25520 5' -57.2 NC_005337.1 + 121989 0.67 0.791379
Target:  5'- cGUGCGCGAgcuccUGCGcGCGGg-GUGCgacCCg -3'
miRNA:   3'- -CACGCGCU-----GCGC-CGCUagCACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 121187 0.69 0.675278
Target:  5'- -cGCGCGAU-UGGCG-UCGccGCUUCCg -3'
miRNA:   3'- caCGCGCUGcGCCGCuAGCa-CGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 119333 0.72 0.531171
Target:  5'- aUGCGCGGCGaCGGUGGacacagCGgccaccacgagagcUGCUUCCa -3'
miRNA:   3'- cACGCGCUGC-GCCGCUa-----GC--------------ACGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 118918 0.68 0.725144
Target:  5'- aGUGCGCGccuggaagcgucGCGCgGGCGcagCGUGCgucgcgcgauaUUCCa -3'
miRNA:   3'- -CACGCGC------------UGCG-CCGCua-GCACG-----------AAGG- -5'
25520 5' -57.2 NC_005337.1 + 118765 0.67 0.781354
Target:  5'- cUGCGCGACGUccuagaugacgccGGCGGcggcgccgUCGUGCcgcgcgcgCCg -3'
miRNA:   3'- cACGCGCUGCG-------------CCGCU--------AGCACGaa------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.