miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 34617 0.7 0.654011
Target:  5'- -gGCGCGcccagccGCGCGGCGAUgcCGcGCacgUCCg -3'
miRNA:   3'- caCGCGC-------UGCGCCGCUA--GCaCGa--AGG- -5'
25520 5' -57.2 NC_005337.1 + 35117 0.69 0.685356
Target:  5'- -cGCGCGGCGCGGaCGcccaGUGCggCg -3'
miRNA:   3'- caCGCGCUGCGCC-GCuag-CACGaaGg -5'
25520 5' -57.2 NC_005337.1 + 35892 0.73 0.467111
Target:  5'- uGUGCGCgGACGCGuacGCGAgCGUGUUUUUa -3'
miRNA:   3'- -CACGCG-CUGCGC---CGCUaGCACGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 36772 0.67 0.809161
Target:  5'- gGUGUGC-ACGCGGaccUCGUGCgacCCg -3'
miRNA:   3'- -CACGCGcUGCGCCgcuAGCACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 36897 0.69 0.69539
Target:  5'- -cGCGCGGCGCGGCGug---GCcgUCa -3'
miRNA:   3'- caCGCGCUGCGCCGCuagcaCGa-AGg -5'
25520 5' -57.2 NC_005337.1 + 38476 0.66 0.84276
Target:  5'- gGUGCGCGccggGCGCGcGCG-UCGccgaGCUggCCg -3'
miRNA:   3'- -CACGCGC----UGCGC-CGCuAGCa---CGAa-GG- -5'
25520 5' -57.2 NC_005337.1 + 38519 0.73 0.457887
Target:  5'- -cGcCGCGAuCGCGGgGAUCGUGCa--- -3'
miRNA:   3'- caC-GCGCU-GCGCCgCUAGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 38594 0.67 0.782272
Target:  5'- -gGCGUGGCGCGaGCGcagcgugggCGUGCUggggaacCCg -3'
miRNA:   3'- caCGCGCUGCGC-CGCua-------GCACGAa------GG- -5'
25520 5' -57.2 NC_005337.1 + 38898 0.7 0.634702
Target:  5'- -cGCGCGucGCGCGGCcGUCGcUGUUgCCu -3'
miRNA:   3'- caCGCGC--UGCGCCGcUAGC-ACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 39228 0.66 0.858456
Target:  5'- cGUGCGCGacaacGCGCaGGCGuUCcUGCccgCCg -3'
miRNA:   3'- -CACGCGC-----UGCG-CCGCuAGcACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 39486 0.71 0.573921
Target:  5'- -cGCGCGACGCGcGCGcgC-UGCUgCUg -3'
miRNA:   3'- caCGCGCUGCGC-CGCuaGcACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 39926 0.69 0.685356
Target:  5'- -cGUGUGGCGCGcGCuGAgcgucaCGUGCUUCa -3'
miRNA:   3'- caCGCGCUGCGC-CG-CUa-----GCACGAAGg -5'
25520 5' -57.2 NC_005337.1 + 39939 0.66 0.858456
Target:  5'- cGUGCGCGGCG-GGCGccUCGcGCg--- -3'
miRNA:   3'- -CACGCGCUGCgCCGCu-AGCaCGaagg -5'
25520 5' -57.2 NC_005337.1 + 40540 0.67 0.817818
Target:  5'- -cGcCGCGGCGC-GCGGUgGUGCggUUCu -3'
miRNA:   3'- caC-GCGCUGCGcCGCUAgCACGa-AGG- -5'
25520 5' -57.2 NC_005337.1 + 40679 0.72 0.495338
Target:  5'- -gGCGCGGCGaCGGCGGUaucuCUUCCu -3'
miRNA:   3'- caCGCGCUGC-GCCGCUAgcacGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 41631 0.66 0.858456
Target:  5'- -gGUGCGACGCccGGCGucucCGUGgaUCg -3'
miRNA:   3'- caCGCGCUGCG--CCGCua--GCACgaAGg -5'
25520 5' -57.2 NC_005337.1 + 42625 0.75 0.379619
Target:  5'- aUGUGCGGCaccGCGGUGGUCGacgGCUgcUCCg -3'
miRNA:   3'- cACGCGCUG---CGCCGCUAGCa--CGA--AGG- -5'
25520 5' -57.2 NC_005337.1 + 43842 0.68 0.763666
Target:  5'- -gGCcgGCGGCGCGGUggaGAUCGUGUa--- -3'
miRNA:   3'- caCG--CGCUGCGCCG---CUAGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 43883 0.67 0.808287
Target:  5'- cGUGCGCGACGCgcacacguaccacGGCcAUCucaGUGCcgggcUCCg -3'
miRNA:   3'- -CACGCGCUGCG-------------CCGcUAG---CACGa----AGG- -5'
25520 5' -57.2 NC_005337.1 + 44519 0.66 0.850706
Target:  5'- -cGCGCu-CGCGGCGGagcuccUCG-GCUaCCg -3'
miRNA:   3'- caCGCGcuGCGCCGCU------AGCaCGAaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.