miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 3' -55.6 NC_005337.1 + 68117 0.68 0.818019
Target:  5'- -cGUACUcggGGUCGCGGggCcgGUGGcCGCg -3'
miRNA:   3'- cuCAUGA---CCGGCGCCuaG--UACCuGCG- -5'
25521 3' -55.6 NC_005337.1 + 68292 0.69 0.772489
Target:  5'- ---gGCcGGCCgGCGG--CGUGGACGCg -3'
miRNA:   3'- cucaUGaCCGG-CGCCuaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 70769 0.68 0.800263
Target:  5'- gGAGUACgaGGCCGCGGccgacucGGAgGCc -3'
miRNA:   3'- -CUCAUGa-CCGGCGCCuagua--CCUgCG- -5'
25521 3' -55.6 NC_005337.1 + 71356 0.7 0.72377
Target:  5'- cGAGUACaGcGCCGUcaaGGA-CAUGGACGa -3'
miRNA:   3'- -CUCAUGaC-CGGCG---CCUaGUACCUGCg -5'
25521 3' -55.6 NC_005337.1 + 71459 0.67 0.859259
Target:  5'- aAGUACcacGuGCCGCaGGUCucgcUGGACGCc -3'
miRNA:   3'- cUCAUGa--C-CGGCGcCUAGu---ACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 74567 0.73 0.529696
Target:  5'- --aUGCUGGCCGCGcGG-CAcgcGGACGCg -3'
miRNA:   3'- cucAUGACCGGCGC-CUaGUa--CCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 76523 0.66 0.907477
Target:  5'- cGGUGgUGGaaCCGCGGGUCGUcguaguugaugaaGG-CGCa -3'
miRNA:   3'- cUCAUgACC--GGCGCCUAGUA-------------CCuGCG- -5'
25521 3' -55.6 NC_005337.1 + 77382 0.67 0.862343
Target:  5'- cGGUGCcgcaacaccagccgGcGCCGCGGGagGUGGAUGUg -3'
miRNA:   3'- cUCAUGa-------------C-CGGCGCCUagUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 80167 0.72 0.570056
Target:  5'- uGGUACgGGCCGUgccGGcgCGcGGACGCg -3'
miRNA:   3'- cUCAUGaCCGGCG---CCuaGUaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 83354 0.8 0.234148
Target:  5'- gGAGgccgACUGGCUGCGGAcCGgccgcUGGGCGCg -3'
miRNA:   3'- -CUCa---UGACCGGCGCCUaGU-----ACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 85399 0.74 0.461891
Target:  5'- uGGU-CUGGCCGcCGGG-CggGGACGCg -3'
miRNA:   3'- cUCAuGACCGGC-GCCUaGuaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 88077 0.75 0.43425
Target:  5'- cGAGcucaUGCaGGCCGUGGAcaUgGUGGACGCc -3'
miRNA:   3'- -CUC----AUGaCCGGCGCCU--AgUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 90381 0.73 0.529696
Target:  5'- uGAG-ACUGGCCGUGGuaCGUGuGCGCg -3'
miRNA:   3'- -CUCaUGACCGGCGCCuaGUACcUGCG- -5'
25521 3' -55.6 NC_005337.1 + 92519 0.67 0.843342
Target:  5'- aGAGccUGCgcGGCCGCcc--CAUGGACGCg -3'
miRNA:   3'- -CUC--AUGa-CCGGCGccuaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 92954 0.66 0.908095
Target:  5'- -cGUGCUGG-UGCG---CGUGGACGCc -3'
miRNA:   3'- cuCAUGACCgGCGCcuaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 95452 0.66 0.901811
Target:  5'- --cUACcGGCCGUucGGAgaacUCGUGGAuCGCg -3'
miRNA:   3'- cucAUGaCCGGCG--CCU----AGUACCU-GCG- -5'
25521 3' -55.6 NC_005337.1 + 95602 0.69 0.781887
Target:  5'- cGGGUGCagcagcgcgccaUGGCgGCGuc-CGUGGGCGCg -3'
miRNA:   3'- -CUCAUG------------ACCGgCGCcuaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 96833 0.66 0.908095
Target:  5'- cGGGUGCgcaGCCGCGG--CGUGG-CGUu -3'
miRNA:   3'- -CUCAUGac-CGGCGCCuaGUACCuGCG- -5'
25521 3' -55.6 NC_005337.1 + 97458 0.66 0.901811
Target:  5'- ---aGgUGGuCCGCG--UCGUGGACGCc -3'
miRNA:   3'- cucaUgACC-GGCGCcuAGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 97614 0.66 0.88155
Target:  5'- ---cGgUGGCCGCGGccuUCGcGGACGg -3'
miRNA:   3'- cucaUgACCGGCGCCu--AGUaCCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.